Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_P22
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.1  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    24   1.1  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    24   1.5  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    24   1.5  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    24   1.5  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    24   1.5  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   4.4  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   5.9  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   7.8  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   7.8  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 296 PVNRYKPNSKINDNNLKKIYQTIN 367
           P+  +  +S+IN   +K++YQ +N
Sbjct: 486 PMVNHSKSSRINIERMKQVYQQLN 509


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 317 NSKINDNNLKKIYQTIN 367
           N+  N+NN KK+Y  IN
Sbjct: 315 NNYYNNNNYKKLYYNIN 331



 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 438 DNIHYASSRYNINYIHLYNIDIKI 509
           +N +Y    YNINYI    I + +
Sbjct: 319 NNNNYKKLYYNINYIEQIPIPVPV 342


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = +2

Query: 302 NRYKPNSKIND--NNLKKIYQTIN 367
           N YK N   N+  NN KK+Y  IN
Sbjct: 94  NNYKYNYNNNNYNNNCKKLYYNIN 117


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = +2

Query: 302 NRYKPNSKIND--NNLKKIYQTIN 367
           N YK N   N+  NN KK+Y  IN
Sbjct: 94  NNYKYNYNNNNYNNNCKKLYYNIN 117


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = +2

Query: 302 NRYKPNSKIND--NNLKKIYQTIN 367
           N YK N   N+  NN KK+Y  IN
Sbjct: 94  NNYKYNYNNNNYNNNCKKLYYNIN 117


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = +2

Query: 302 NRYKPNSKIND--NNLKKIYQTIN 367
           N YK N   N+  NN KK+Y  IN
Sbjct: 94  NNYKYNYNNNNYNNNCKKLYYNIN 117


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 302 NRYKPNSKINDNNLKKIYQTIN 367
           N Y   +   +NN KK+Y  IN
Sbjct: 335 NNYNNYNNNYNNNYKKLYYNIN 356


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +3

Query: 441 NIHYASSRYNINYIHLYNIDIKINTLY 521
           N +Y    YNINYI    + +     Y
Sbjct: 328 NNNYKPLHYNINYIEQIPVPVPFPVYY 354


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +3

Query: 408 YFFLITHCRLDNIHYASSRYNINYIHLYNIDIKI 509
           Y   I++   DN +     YNINYI    + + +
Sbjct: 89  YISNISNYNNDNNYNKKLYYNINYIEQIPVPVPV 122


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 302 NRYKPNSKINDNNLKKIYQTI 364
           N Y   +  N NN KK+Y  I
Sbjct: 336 NNYNNYNNNNYNNYKKLYYNI 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,968
Number of Sequences: 438
Number of extensions: 2949
Number of successful extensions: 29
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)