Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_P21
(338 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1204 + 34936696-34936698,34936809-34936944,34937794-349378... 102 6e-23
08_01_0195 + 1612938-1613003,1613026-1613161,1614624-1614725,161... 102 8e-23
02_01_0089 + 633642-633644,633728-633863,635356-635457,635565-63... 101 1e-22
07_03_1310 - 25673140-25673418,25673837-25674082,25674189-256744... 35 0.019
11_06_0288 - 21962546-21962977,21963041-21963211,21963411-21963788 27 3.8
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477... 27 3.8
09_04_0019 - 13833358-13833526,13834207-13834390,13834977-13835292 27 5.0
07_03_1554 + 27659995-27660093,27661084-27661120,27661204-276612... 26 6.6
11_06_0172 - 20877029-20878049,20880129-20880400 26 8.7
05_07_0219 - 28474661-28475146,28475979-28476644 26 8.7
03_02_0347 - 7676510-7677832 26 8.7
>02_05_1204 +
34936696-34936698,34936809-34936944,34937794-34937895,
34938153-34938199
Length = 95
Score = 102 bits (245), Expect = 6e-23
Identities = 50/86 (58%), Positives = 59/86 (68%)
Frame = -2
Query: 286 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 107
M KGT SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA
Sbjct: 1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTG 60
Query: 106 XXRMRHLKIVQEALP*WF*RRETNAA 29
RMR+L+ V + F R T AA
Sbjct: 61 TGRMRYLRHVPKRFKSNF-REGTEAA 85
>08_01_0195 +
1612938-1613003,1613026-1613161,1614624-1614725,
1614833-1614876
Length = 115
Score = 102 bits (244), Expect = 8e-23
Identities = 44/76 (57%), Positives = 56/76 (73%)
Frame = -2
Query: 304 IVKSDKMTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAX 125
++ S + KGT SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA
Sbjct: 16 LLHSSNVGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAI 75
Query: 124 XXXXXXXXRMRHLKIV 77
RMR+++ V
Sbjct: 76 RRKTTGTGRMRYMRHV 91
>02_01_0089 +
633642-633644,633728-633863,635356-635457,635565-635608
Length = 94
Score = 101 bits (242), Expect = 1e-22
Identities = 44/70 (62%), Positives = 53/70 (75%)
Frame = -2
Query: 286 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 107
M KGT SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R Y+WSVKA
Sbjct: 1 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTG 60
Query: 106 XXRMRHLKIV 77
RMR+++ V
Sbjct: 61 TGRMRYMRHV 70
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 72 RRFRNGFKEGKPTPPKKAVASS 7
RRF++ F+EG P+K A++
Sbjct: 72 RRFKSNFREGTEATPRKRAAAA 93
>07_03_1310 -
25673140-25673418,25673837-25674082,25674189-25674465,
25675474-25675751,25675845-25676378
Length = 537
Score = 34.7 bits (76), Expect = 0.019
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = -3
Query: 132 RLSAGRLLELAACVI*RLYRRRFRNGFKEGKPTPP 28
RL+A + LELA + RL RRR R+G P PP
Sbjct: 500 RLNASQSLELAFIIAERLRRRRMRSGVNSNLPLPP 534
>11_06_0288 - 21962546-21962977,21963041-21963211,21963411-21963788
Length = 326
Score = 27.1 bits (57), Expect = 3.8
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -1
Query: 173 ISCSKITILPLVSEG*AQEDYWNW--PHASFEDC 78
I+ +T + +S + +D W W PH +EDC
Sbjct: 116 IALPPVTTIEQLSIARSGDDKWTWLPPHKDYEDC 149
>10_08_0324 +
16747117-16747330,16747432-16747559,16747675-16747744,
16747832-16747988,16748089-16748701,16749132-16749653,
16749686-16750279,16750359-16750709,16750808-16751395
Length = 1078
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = -2
Query: 262 GKRRNKTHTLCRRCGRSSYHIQKSK----CAQCGYPAAK 158
G+ + K T CR CG + K CA+CG+P K
Sbjct: 9 GEHKGKEKT-CRVCGEEVAAREDGKPFVACAECGFPVCK 46
>09_04_0019 - 13833358-13833526,13834207-13834390,13834977-13835292
Length = 222
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 274 TSSFGKRRNKTHTLCRRCGRSSYHIQKS 191
T +FG K HT CR CG +S++ +S
Sbjct: 26 TYTFGTHTAK-HTFCRVCGITSFYTPRS 52
>07_03_1554 +
27659995-27660093,27661084-27661120,27661204-27661280,
27662272-27662342,27662512-27662590,27662726-27662828,
27662963-27663082,27663180-27663257,27663416-27663471,
27663588-27663657,27664179-27664266,27664503-27664800,
27664943-27665158,27665521-27665841,27666054-27666103,
27666493-27666553,27666633-27666716,27666926-27667039,
27667134-27667300,27667559-27667628,27668328-27668507,
27668619-27668807
Length = 875
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -3
Query: 132 RLSAGRLLELAACVI*RLYRRRFRNGFKEGKPTPPKKAV 16
R+ +G+L E +AC LY + + +G+P+ KA+
Sbjct: 443 RILSGKLSETSACTAGDLYDYKVADDDSDGEPSTEDKAL 481
>11_06_0172 - 20877029-20878049,20880129-20880400
Length = 430
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/16 (56%), Positives = 10/16 (62%), Gaps = 2/16 (12%)
Frame = -1
Query: 116 DYWNW--PHASFEDCT 75
D W W PH F+DCT
Sbjct: 225 DKWTWLPPHLRFQDCT 240
>05_07_0219 - 28474661-28475146,28475979-28476644
Length = 383
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 298 KSDKMT-KGTSSFGKRRNKTHTLCRRCGR 215
KSD+ + G F + NK+ CRRCG+
Sbjct: 322 KSDEASGNGEKKFRGKFNKSKIECRRCGK 350
>03_02_0347 - 7676510-7677832
Length = 440
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +1
Query: 151 IVILLQDIHIGRILIFECDMTIYHIFCIT 237
++ LL+ + IGR+ +++ D + H F T
Sbjct: 53 VLPLLEGLGIGRVRLYDADPAVLHAFAKT 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,683,892
Number of Sequences: 37544
Number of extensions: 183558
Number of successful extensions: 396
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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