Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_P18
         (367 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1S775 Cluster: TonB-dependent receptor precursor; n=2;...    36   0.17 
UniRef50_Q7MWE0 Cluster: ABC transporter, permease protein, puta...    31   4.9  

>UniRef50_A1S775 Cluster: TonB-dependent receptor precursor; n=2;
           Alteromonadales|Rep: TonB-dependent receptor precursor -
           Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
          Length = 1068

 Score = 36.3 bits (80), Expect = 0.17
 Identities = 17/74 (22%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
 Frame = -3

Query: 224 QIIETQIICGMTWNLRVFAAIFIDRWWTIYACVSYMRQRXGDERISLVLNKITHCIFSKY 45
           ++ + +++ G+T NL VF AI +D W+  +  VS+   +  D+R+ +   ++ + +++  
Sbjct: 467 EVEQYRVVAGVTGNLPVFEAIGLDNWYYDF-YVSHSASKGTDKRVGINEERLLNSLYTSV 525

Query: 44  VPTDTR-XANEGDD 6
           +  D      +G D
Sbjct: 526 MDADGNVTCGDGSD 539


>UniRef50_Q7MWE0 Cluster: ABC transporter, permease protein,
           putative; n=1; Porphyromonas gingivalis|Rep: ABC
           transporter, permease protein, putative - Porphyromonas
           gingivalis (Bacteroides gingivalis)
          Length = 783

 Score = 31.5 bits (68), Expect = 4.9
 Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
 Frame = +1

Query: 103 PXL*RMYDTQAYIVHHLSMNMAAKTRKFQVIPQIICVSM---ICESYHPTVLEDGMTHRM 273
           P   R++DT  Y+  H+S+ +      F ++  I+C ++       + P  +  G   R+
Sbjct: 354 PVFDRLFDTHLYLARHISLTLILLLIGFMLLLSIVCAALPAWFISRFRPIEVVSGKFRRV 413

Query: 274 NKHKYYXI----XYXI*AMIISINPVYLVPL 354
            K  +  I     Y I  +++S   V  V +
Sbjct: 414 VKSSFSQIMVISQYAITMILLSCTMVMAVQI 444


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 353,331,206
Number of Sequences: 1657284
Number of extensions: 6287767
Number of successful extensions: 11879
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11877
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 13220924981
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)