Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_P18
(367 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z11166-1|CAA77558.1| 365|Homo sapiens serotonin receptor protein. 30 2.6
M92826-1|AAA58355.1| 365|Homo sapiens serotonin receptor protein. 30 2.6
M91467-1|AAA58353.1| 365|Homo sapiens serotonin receptor protein. 30 2.6
BC069751-1|AAH69751.1| 365|Homo sapiens HTR1E protein protein. 30 2.6
AL157777-5|CAC10582.1| 365|Homo sapiens 5-hydroxytryptamine (se... 30 2.6
AF498980-1|AAM21127.1| 365|Homo sapiens 5-hydroxytryptamine rec... 30 2.6
AB041373-1|BAA94458.1| 363|Homo sapiens 5-hydroxytryptamine (se... 30 2.6
CR456596-1|CAG30482.1| 862|Homo sapiens TOP3B protein. 29 3.5
BC002432-1|AAH02432.1| 862|Homo sapiens topoisomerase (DNA) III... 29 3.5
AF125216-1|AAD29670.1| 862|Homo sapiens DNA topoisomerase III b... 29 3.5
AF053082-1|AAD15791.1| 862|Homo sapiens DNA topoisomerase III b... 29 3.5
AF017146-1|AAD01614.1| 862|Homo sapiens DNA topoisomerase III b... 29 3.5
>Z11166-1|CAA77558.1| 365|Homo sapiens serotonin receptor protein.
Length = 365
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = -3
Query: 278 LFIL*VIPSSSTVGWYDSQI-IETQIICGMTWNLRVFAAIFIDRWWTIYACVSYMRQRXG 102
L I+ ++ +G++ ++ + + C T ++ I +DR+W I + Y R+R
Sbjct: 78 LSIIYIVMDRWKLGYFLCEVWLSVDMTC-CTCSILHLCVIALDRYWAITNAIEYARKRTA 136
Query: 101 DERISLVLNKITHCIFSKYVP 39
++L T IF P
Sbjct: 137 KRAALMILTVWTISIFISMPP 157
>M92826-1|AAA58355.1| 365|Homo sapiens serotonin receptor protein.
Length = 365
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = -3
Query: 278 LFIL*VIPSSSTVGWYDSQI-IETQIICGMTWNLRVFAAIFIDRWWTIYACVSYMRQRXG 102
L I+ ++ +G++ ++ + + C T ++ I +DR+W I + Y R+R
Sbjct: 78 LSIIYIVMDRWKLGYFLCEVWLSVDMTC-CTCSILHLCVIALDRYWAITNAIEYARKRTA 136
Query: 101 DERISLVLNKITHCIFSKYVP 39
++L T IF P
Sbjct: 137 KRAALMILTVWTISIFISMPP 157
>M91467-1|AAA58353.1| 365|Homo sapiens serotonin receptor protein.
Length = 365
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = -3
Query: 278 LFIL*VIPSSSTVGWYDSQI-IETQIICGMTWNLRVFAAIFIDRWWTIYACVSYMRQRXG 102
L I+ ++ +G++ ++ + + C T ++ I +DR+W I + Y R+R
Sbjct: 78 LSIIYIVMDRWKLGYFLCEVWLSVDMTC-CTCSILHLCVIALDRYWAITNAIEYARKRTA 136
Query: 101 DERISLVLNKITHCIFSKYVP 39
++L T IF P
Sbjct: 137 KRAALMILTVWTISIFISMPP 157
>BC069751-1|AAH69751.1| 365|Homo sapiens HTR1E protein protein.
Length = 365
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = -3
Query: 278 LFIL*VIPSSSTVGWYDSQI-IETQIICGMTWNLRVFAAIFIDRWWTIYACVSYMRQRXG 102
L I+ ++ +G++ ++ + + C T ++ I +DR+W I + Y R+R
Sbjct: 78 LSIIYIVMDRWKLGYFLCEVWLSVDMTC-CTCSILHLCVIALDRYWAITNAIEYARKRTA 136
Query: 101 DERISLVLNKITHCIFSKYVP 39
++L T IF P
Sbjct: 137 KRAALMILTVWTISIFISMPP 157
>AL157777-5|CAC10582.1| 365|Homo sapiens 5-hydroxytryptamine
(serotonin) receptor 1E protein.
Length = 365
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = -3
Query: 278 LFIL*VIPSSSTVGWYDSQI-IETQIICGMTWNLRVFAAIFIDRWWTIYACVSYMRQRXG 102
L I+ ++ +G++ ++ + + C T ++ I +DR+W I + Y R+R
Sbjct: 78 LSIIYIVMDRWKLGYFLCEVWLSVDMTC-CTCSILHLCVIALDRYWAITNAIEYARKRTA 136
Query: 101 DERISLVLNKITHCIFSKYVP 39
++L T IF P
Sbjct: 137 KRAALMILTVWTISIFISMPP 157
>AF498980-1|AAM21127.1| 365|Homo sapiens 5-hydroxytryptamine
receptor 1E protein.
Length = 365
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = -3
Query: 278 LFIL*VIPSSSTVGWYDSQI-IETQIICGMTWNLRVFAAIFIDRWWTIYACVSYMRQRXG 102
L I+ ++ +G++ ++ + + C T ++ I +DR+W I + Y R+R
Sbjct: 78 LSIIYIVMDRWKLGYFLCEVWLSVDMTC-CTCSILHLCVIALDRYWAITNAIEYARKRTA 136
Query: 101 DERISLVLNKITHCIFSKYVP 39
++L T IF P
Sbjct: 137 KRAALMILTVWTISIFISMPP 157
>AB041373-1|BAA94458.1| 363|Homo sapiens 5-hydroxytryptamine
(serotonin) receptor 1E protein.
Length = 363
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = -3
Query: 278 LFIL*VIPSSSTVGWYDSQI-IETQIICGMTWNLRVFAAIFIDRWWTIYACVSYMRQRXG 102
L I+ ++ +G++ ++ + + C T ++ I +DR+W I + Y R+R
Sbjct: 78 LSIIYIVMDRWKLGYFLCEVWLSVDMTC-CTCSILHLCVIALDRYWAITNAIEYARKRTA 136
Query: 101 DERISLVLNKITHCIFSKYVP 39
++L T IF P
Sbjct: 137 KRAALMILTVWTISIFISMPP 157
>CR456596-1|CAG30482.1| 862|Homo sapiens TOP3B protein.
Length = 862
Score = 29.5 bits (63), Expect = 3.5
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Frame = -1
Query: 280 VCSFCESYHPPVR*--DGM-----THRS*KHRLSVV*LGTCV----FLLPYSLTDGGQYT 134
+C +C + HPP R GM TH S +H LS++ +G CV +L T G ++
Sbjct: 687 LCPYCYN-HPPFRDMKKGMGCNECTHPSCQHSLSMLGIGQCVECESGVLVLDPTSGPKWK 745
Query: 133 LVCHTC 116
+ C+ C
Sbjct: 746 VACNKC 751
>BC002432-1|AAH02432.1| 862|Homo sapiens topoisomerase (DNA) III
beta protein.
Length = 862
Score = 29.5 bits (63), Expect = 3.5
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Frame = -1
Query: 280 VCSFCESYHPPVR*--DGM-----THRS*KHRLSVV*LGTCV----FLLPYSLTDGGQYT 134
+C +C + HPP R GM TH S +H LS++ +G CV +L T G ++
Sbjct: 687 LCPYCYN-HPPFRDMKKGMGCNECTHPSCQHSLSMLGIGQCVECESGVLVLDPTSGPKWK 745
Query: 133 LVCHTC 116
+ C+ C
Sbjct: 746 VACNKC 751
>AF125216-1|AAD29670.1| 862|Homo sapiens DNA topoisomerase III beta
protein.
Length = 862
Score = 29.5 bits (63), Expect = 3.5
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Frame = -1
Query: 280 VCSFCESYHPPVR*--DGM-----THRS*KHRLSVV*LGTCV----FLLPYSLTDGGQYT 134
+C +C + HPP R GM TH S +H LS++ +G CV +L T G ++
Sbjct: 687 LCPYCYN-HPPFRDMKKGMGCNECTHPSCQHSLSMLGIGQCVECESGVLVLDPTSGPKWK 745
Query: 133 LVCHTC 116
+ C+ C
Sbjct: 746 VACNKC 751
>AF053082-1|AAD15791.1| 862|Homo sapiens DNA topoisomerase III beta
protein.
Length = 862
Score = 29.5 bits (63), Expect = 3.5
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Frame = -1
Query: 280 VCSFCESYHPPVR*--DGM-----THRS*KHRLSVV*LGTCV----FLLPYSLTDGGQYT 134
+C +C + HPP R GM TH S +H LS++ +G CV +L T G ++
Sbjct: 687 LCPYCYN-HPPFRDMKKGMGCNECTHPSCQHSLSMLGIGQCVECESGVLVLDPTSGPKWK 745
Query: 133 LVCHTC 116
+ C+ C
Sbjct: 746 VACNKC 751
>AF017146-1|AAD01614.1| 862|Homo sapiens DNA topoisomerase III beta
protein.
Length = 862
Score = 29.5 bits (63), Expect = 3.5
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Frame = -1
Query: 280 VCSFCESYHPPVR*--DGM-----THRS*KHRLSVV*LGTCV----FLLPYSLTDGGQYT 134
+C +C + HPP R GM TH S +H LS++ +G CV +L T G ++
Sbjct: 687 LCPYCYN-HPPFRDMKKGMGCNECTHPSCQHSLSMLGIGQCVECESGVLVLDPTSGPKWK 745
Query: 133 LVCHTC 116
+ C+ C
Sbjct: 746 VACNKC 751
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,381,864
Number of Sequences: 237096
Number of extensions: 974986
Number of successful extensions: 1481
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1481
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2306171440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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