Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_P18
         (367 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U20864-8|AAC46665.2|  330|Caenorhabditis elegans Peroxisome asse...    29   0.77 
U42832-5|ABA03119.1|  468|Caenorhabditis elegans Hypothetical pr...    28   1.8  
U42832-4|AAA83574.4|  462|Caenorhabditis elegans Hypothetical pr...    28   1.8  
U23513-6|AAB36864.1| 1168|Caenorhabditis elegans Hypothetical pr...    28   1.8  
Z72509-4|CAA96648.3|  405|Caenorhabditis elegans Hypothetical pr...    26   7.2  

>U20864-8|AAC46665.2|  330|Caenorhabditis elegans Peroxisome
           assembly factor protein13 protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 0.77
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
 Frame = -3

Query: 254 SSSTVGWYDSQIIETQII------CGMTWNLRVFAAIFIDRWWTIYACVSYMRQRXGDER 93
           S++ + W  SQ   T ++        + W   +F  + I   W IY CVS M Q   ++R
Sbjct: 169 SAAEMAWGTSQPYATDVLGATRTPASVNWPAALFWVVAIGGPWLIYRCVSQMVQAAEEKR 228


>U42832-5|ABA03119.1|  468|Caenorhabditis elegans Hypothetical
           protein F01E11.5c protein.
          Length = 468

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -3

Query: 218 IETQIICGMT--WNLRVFAAIFIDRWWTIYACVSYMRQR 108
           +   I+C     WNL +   + +DR+W I + V+YM +R
Sbjct: 95  VSADILCSTASIWNLSI---VGLDRYWAITSPVAYMSKR 130


>U42832-4|AAA83574.4|  462|Caenorhabditis elegans Hypothetical
           protein F01E11.5a protein.
          Length = 462

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -3

Query: 218 IETQIICGMT--WNLRVFAAIFIDRWWTIYACVSYMRQR 108
           +   I+C     WNL +   + +DR+W I + V+YM +R
Sbjct: 95  VSADILCSTASIWNLSI---VGLDRYWAITSPVAYMSKR 130


>U23513-6|AAB36864.1| 1168|Caenorhabditis elegans Hypothetical protein
            D2021.1 protein.
          Length = 1168

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 178  VFLLPYSLTDGGQYTLVCHTCVRXQGTSGF 89
            VF + +    GG++T+ C  C + QG  GF
Sbjct: 1106 VFCILFVKDIGGKFTVFCVYCAKSQGIEGF 1135


>Z72509-4|CAA96648.3|  405|Caenorhabditis elegans Hypothetical
           protein F32G8.4 protein.
          Length = 405

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 239 GWYDSQIIETQIICGMTWNLRVFAAIFIDRWWTIYACVSY 120
           GW     I  Q I  +++ L  F ++ + RWW  + C+S+
Sbjct: 56  GWIMWCEIGAQYI-PLSFLLGFFVSLIVARWWEQFNCISW 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,423,316
Number of Sequences: 27780
Number of extensions: 163350
Number of successful extensions: 355
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)