Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_P17
(632 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 332 2e-92
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 330 1e-91
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 139 4e-34
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 75 9e-15
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.14
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.18
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.56
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 29 0.74
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 0.97
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 1.7
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 3.9
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 3.9
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 26 5.2
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 26 5.2
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 6.9
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 25 6.9
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 25 9.1
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 25 9.1
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 332 bits (816), Expect = 2e-92
Identities = 145/183 (79%), Positives = 165/183 (90%)
Frame = -2
Query: 628 LVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCML 449
LVPYPRIHFPLVTY+P++SA KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+L
Sbjct: 263 LVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLL 322
Query: 448 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 269
YRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y+PP VPG +AKV RAVCML
Sbjct: 323 YRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCML 382
Query: 268 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 89
SNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG D
Sbjct: 383 SNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQD 442
Query: 88 SAE 80
S +
Sbjct: 443 SMD 445
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 330 bits (811), Expect = 1e-91
Identities = 146/183 (79%), Positives = 163/183 (89%)
Frame = -2
Query: 628 LVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCML 449
LVPYPRIHFPLVTYAP++SA KA+HE SV EITN CFEP NQMVKCDPR G+YMA C+L
Sbjct: 259 LVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLL 318
Query: 448 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 269
YRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI +PP + G ++AKV RAVCML
Sbjct: 319 YRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCML 378
Query: 268 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 89
SNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG D
Sbjct: 379 SNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQD 438
Query: 88 SAE 80
S E
Sbjct: 439 SME 441
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 139 bits (336), Expect = 4e-34
Identities = 68/186 (36%), Positives = 109/186 (58%), Gaps = 3/186 (1%)
Frame = -2
Query: 628 LVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCML 449
+VP+PR+HF +V +AP+ + + + +SV E+T F+ N MV DPRHG+Y+ L
Sbjct: 257 MVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAAL 316
Query: 448 YRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCML 269
+RG V K+V+ I +++TK + FV+W P + PP DL + + +
Sbjct: 317 FRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK-----DL---KMSATFI 368
Query: 268 SNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEV 98
N+T+I E + RL +F M+ ++AF+HWY GEGM+E EF+EA DL + + Y+E
Sbjct: 369 GNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEA 428
Query: 97 GMDSAE 80
G+D +
Sbjct: 429 GIDEGD 434
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 74.9 bits (176), Expect = 9e-15
Identities = 48/182 (26%), Positives = 90/182 (49%), Gaps = 7/182 (3%)
Frame = -2
Query: 628 LVPYPRIHFPLVTYAPVISA---EKAYHEQLSVAEITNACFEPANQMVKCDP-RHGKYMA 461
L+P PR HF L +Y P + E + +V ++ P NQMV +P + +++
Sbjct: 260 LIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFIS 319
Query: 460 CCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRA 281
+ +G+ P DV+ ++ I+ +R F+ W P +V ++ + P + ++ +
Sbjct: 320 ILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL--- 376
Query: 280 VCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKD 110
ML+N T+IA + R ++D + + AF+ Y E + E EF +R+ +A L +
Sbjct: 377 --MLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINE 434
Query: 109 YE 104
YE
Sbjct: 435 YE 436
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 31.1 bits (67), Expect = 0.14
Identities = 24/89 (26%), Positives = 33/89 (37%)
Frame = -3
Query: 576 SLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPS 397
S+P+ P P S + P P + S VV P + RP++P
Sbjct: 513 SVPQPPAAPVVPEAPSVHQPPAAPV-----APEVPSAPQRPAAPVVPEAPSVPQRPAVPV 567
Query: 396 KPSVLSNSSTGVQPVSRSVSTTSHPPWCP 310
P LS V PV+ V + PP P
Sbjct: 568 VPEALSVPQPPVAPVAPEVPSVPQPPVAP 596
Score = 25.4 bits (53), Expect = 6.9
Identities = 23/90 (25%), Positives = 31/90 (34%)
Frame = -3
Query: 576 SLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLPS 397
S+P+RP + P S P P + +A S P+ P P
Sbjct: 558 SVPQRPAVPVVPEALSVPQPPVAPVA--PEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPE 615
Query: 396 KPSVLSNSSTGVQPVSRSVSTTSHPPWCPE 307
PSV + V P + SV P PE
Sbjct: 616 VPSVPQRPAVPVVPEAPSVPQPPAAPVVPE 645
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = -3
Query: 444 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 310
VV P + RP++P P S PV V + PP P
Sbjct: 642 VVPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQPPAVP 686
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.7 bits (66), Expect = 0.18
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Frame = -3
Query: 588 TRQSSLPRRPTM--NSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSYPRM*T 415
T S+ P PT+ S +P + T+ ++ + +TPV ++ CT TS P T
Sbjct: 402 TGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPY--T 459
Query: 414 RPSLPSKPSVLSNSSTGVQPVSRSVSTTSHP 322
+ S P +N +T S TS P
Sbjct: 460 STPVTSTPLTTTNCTTSTSIPYTSTPVTSTP 490
Score = 29.1 bits (62), Expect = 0.56
Identities = 28/97 (28%), Positives = 46/97 (47%)
Frame = -3
Query: 618 TPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVV 439
TPV++S++ T SS P T P + T+ ++ + +TPV ++ CT
Sbjct: 507 TPVTSSNY--TISSSTPVTST------PVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTS 558
Query: 438 TSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTS 328
TS P T P S ++ S++ PV+ + TTS
Sbjct: 559 TSVPYTST-PVTSSNYTISSSTPVTSTPVTTTNCTTS 594
Score = 27.9 bits (59), Expect = 1.3
Identities = 25/97 (25%), Positives = 44/97 (45%)
Frame = -3
Query: 618 TPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVV 439
TP++T++ T +S+P T + +P + T+ ++ + +TPV ++ CT
Sbjct: 420 TPLTTTNC--TTSTSVPYTSTPVT-STPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTS 476
Query: 438 TSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTS 328
TS P T + S P +N +T S TS
Sbjct: 477 TSIPY--TSTPVTSTPLTTTNCTTSTSVPYTSTPVTS 511
Score = 25.8 bits (54), Expect = 5.2
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Frame = -3
Query: 618 TPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVV 439
TP++T++ T +S+P T + +P + T+ ++ + +TPV +S + T V
Sbjct: 466 TPLTTTNC--TTSTSIPYTSTPVT-STPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPV 522
Query: 438 TSYPRM*TRPSLPSKPSVLSNSSTGVQ-PVSRSVSTTS 328
TS P T + + SVL S+ P++ + TTS
Sbjct: 523 TSTPV--TTTNCTTSTSVLYTSTPVTSTPLATTNCTTS 558
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.1 bits (62), Expect = 0.56
Identities = 23/81 (28%), Positives = 41/81 (50%)
Frame = -3
Query: 609 STSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVTSY 430
STS + T SS RP +S S +H SS ++ ++ PV ++ + + +S+
Sbjct: 377 STSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKS-SSAPVSSAFYHNSTSSRSSSH 435
Query: 429 PRM*TRPSLPSKPSVLSNSST 367
+ SL SKP + ++SS+
Sbjct: 436 SSSHSLSSLSSKPILTASSSS 456
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 28.7 bits (61), Expect = 0.74
Identities = 20/73 (27%), Positives = 34/73 (46%)
Frame = +2
Query: 404 SDGRVHILGYDVTTVQHTASHVLAMTGVAFHHLVGGLEACVCDLGDGKLFMVGLLGRDDW 583
S G +LGY ++ A++V+A + V HL+ G D + K G D
Sbjct: 407 SAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSESK-------GLDML 459
Query: 584 RVRDQWEVDTGVR 622
R Q+E++ G++
Sbjct: 460 VDRVQYELEAGLQ 472
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 0.97
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -2
Query: 532 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 407
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -3
Query: 615 PVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTR 499
P S + T +SS+P P N+ PSP S + AS+ P R
Sbjct: 1242 PSSEAPSVSTPRSSVPS-PHSNASPSPTSSSMASAAPAR 1279
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 3.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 582 QSSLPRRPTMNSFPSPRSQTHASSPPTR 499
+ SLPRRP+ +P S T ++ PP +
Sbjct: 738 RGSLPRRPSSALLTNPISITKSNPPPVK 765
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -3
Query: 408 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 322
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 427 WVRRHHGTAYSKPCTCHDGG 486
W R H Y+KPC DGG
Sbjct: 16 WRRDHPFGFYAKPCKSSDGG 35
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 5.2
Identities = 16/51 (31%), Positives = 31/51 (60%)
Frame = -3
Query: 621 LTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMAS 469
LTP + S +S + +S +R ++N+ PS + +H+SS T + PV+++
Sbjct: 130 LTPKNPSLFSSSNAAS--QRGSLNTAPSNFAYSHSSSLQTSASSRPPVLSN 178
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -3
Query: 411 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 316
P PS+P+++SN ST G+Q V V + W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.4 bits (53), Expect = 6.9
Identities = 22/84 (26%), Positives = 36/84 (42%)
Frame = -3
Query: 615 PVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVVT 436
P+ SH S + S+ R + + H S PT+ +AT + S AV T
Sbjct: 253 PLDASHLSSQQLLSMYRDQVSHGVTPSTFRNHESFMPTQLVSATELSKSVDNAVLPIPPT 312
Query: 435 SYPRM*TRPSLPSKPSVLSNSSTG 364
+ P + P S P + S +++G
Sbjct: 313 TAPAV-VSPPASSFPLMSSAATSG 335
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 25.0 bits (52), Expect = 9.1
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = -3
Query: 429 PRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPP 319
PR LP K VL T + VSR TTS P
Sbjct: 293 PRPLLNSKLPRKTLVLDLDETLIHSVSRGSRTTSGQP 329
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.0 bits (52), Expect = 9.1
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = -3
Query: 489 ATPVMASTWLAVCCTVVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 310
+TP ++S A VV+S T + S S ++SS P S SVS W P
Sbjct: 245 STPAVSSA-AASSSAVVSSVVSSATSVAASSTISSATSSSASASPTSSSVSGKRGLAWIP 303
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,742,846
Number of Sequences: 5004
Number of extensions: 57424
Number of successful extensions: 227
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -