Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_P16
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1060 + 10958632-10958871,10959006-10959272                      211   3e-55
12_01_0913 + 8882193-8883510,8887633-8887865,8889619-8889871,889...    29   3.5  

>12_01_1060 + 10958632-10958871,10959006-10959272
          Length = 168

 Score =  211 bits (516), Expect = 3e-55
 Identities = 96/119 (80%), Positives = 105/119 (88%)
 Frame = -1

Query: 452 DFYIRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEAYVHPCVMDELKRI 273
           +FY+RYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKE +V P V+ E +RI
Sbjct: 16  EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRKEVFVSPSVLREARRI 75

Query: 272 IIDSEIMHEDDRLWPQPDRVGRQELEIVIGEEHISFTTSKTGSLVDVNQSRDPEGLRGF 96
           I +SEIM EDD  WP+PDRVGRQELEIV+G EHISFTTSK GSLVDV  S+DPEGLR F
Sbjct: 76  IQESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQTSKDPEGLRIF 134


>12_01_0913 +
           8882193-8883510,8887633-8887865,8889619-8889871,
           8891281-8891470,8891641-8891773,8891797-8891886
          Length = 738

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 603 YTRVFNSIIGRPNSFKFPIVSRIKYVLAVV 692
           Y R+  S IGRP  +K P+V  +  VL ++
Sbjct: 431 YQRLAKSEIGRPPHWKLPVVITVAVVLVII 460


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,764,012
Number of Sequences: 37544
Number of extensions: 297591
Number of successful extensions: 660
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)