Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_P15
         (621 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens ...    31   3.3  
AF494040-1|AAM12861.1| 4116|Homo sapiens axonemal heavy chain dy...    30   7.6  

>AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42813 fis, clone BRCAN2012355. ).
          Length = 180

 Score = 31.1 bits (67), Expect = 3.3
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = -2

Query: 224 IYLLVYNTIPHKPFASFYTTKTYCIH---YLYVISLIYTCFGKHIFTNNFTIYFCKSTY 57
           I++ VY  I    +   YT    C+H   Y+ +   IYTC   +I+   +T+Y C  TY
Sbjct: 91  IHMCVYTYI----YVYIYTHIHICVHINMYVSIYVYIYTCIQIYIYM--YTLYVCTYTY 143


>AF494040-1|AAM12861.1| 4116|Homo sapiens axonemal heavy chain dynein
            type 3 protein.
          Length = 4116

 Score = 29.9 bits (64), Expect = 7.6
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -2

Query: 179  SFYTTKTYCIHYLYVISLIYTCFGKHIFTNNFTIYFCKSTY 57
            SF+  KTY  H + ++ +  T  GK   TNNF ++  K+TY
Sbjct: 2057 SFFL-KTYLDHEIPMLFVGPTGTGKSAITNNFLLHLPKNTY 2096


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,158,851
Number of Sequences: 237096
Number of extensions: 1390341
Number of successful extensions: 1672
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1672
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6691573490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)