Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_P11
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    26   6.2  
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi...    26   6.2  
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch...    26   6.2  

>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -3

Query: 483 FSIIVHSFITY-FNDFFLLI*SVFIIVGFQKIQYN*IRSFITIDQIL*DSSFEK 325
           FS+I  SF+    N F LLI S+FII G         R+FI     L   SFEK
Sbjct: 523 FSLIPSSFVPMNRNIFLLLISSLFIIAGNTGFPCF-FRTFIWTTYKLYPFSFEK 575


>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +2

Query: 506 FKMFIP*AIIS*LVFEPL--NYYSKQVGLGVLFSFYFVXWSSD 628
           F  F+P  II  L F  L  NY +  V +  + SF FV W SD
Sbjct: 306 FSSFLP-VIIKGLGFVGLQTNYMTIPVYIAGVISFLFVAWLSD 347


>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 185

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 585 LECCFLFISFXGLQIDQLRCLXNXLYSCXVQKHKRLLYIEMGIRF 719
           L C F+F +  G+ +  L CL     +  +   + +L+  +GI F
Sbjct: 19  LPCLFIFAAIVGMNLSLLYCLLKGWKNVMIWGIETMLFGAIGIFF 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,845,682
Number of Sequences: 5004
Number of extensions: 56850
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)