Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_P11
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_1052 - 22567937-22568329,22568436-22568669,22568787-225691...    31   0.70 
11_01_0639 - 5128139-5128159,5128237-5128329,5128431-5128491,512...    29   4.9  

>10_08_1052 -
           22567937-22568329,22568436-22568669,22568787-22569111,
           22569239-22569484,22569576-22569916,22570070-22570150,
           22570275-22570394,22570549-22570650,22570900-22571035,
           22571210-22571362,22572605-22572906
          Length = 810

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +2

Query: 83  LCFPFITLSIMKFAIT---HAFEFIYCILICF*TVIGNISVYVKIYPYI 220
           L  PF +LSI KF I+    A  F Y I I F   + N+    K+ P++
Sbjct: 358 LAIPFFSLSIRKFLISIAVFALVFFYMIPIAFVQSLANLEGIEKVAPFL 406


>11_01_0639 -
           5128139-5128159,5128237-5128329,5128431-5128491,
           5128579-5128689,5128770-5129021,5129105-5129440,
           5129486-5131140,5131316-5131555
          Length = 922

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 22  KSIFFQSRVGQITLHLENLFALFSFYNFKYNEIC 123
           K I     +GQ  LH +N   + + YNF  N IC
Sbjct: 800 KLITIAQYIGQAFLHFQNKRVVMAAYNFNDNYIC 833


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,596,675
Number of Sequences: 37544
Number of extensions: 269228
Number of successful extensions: 416
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)