Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_P11
         (719 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L22343-1|AAD13402.1|  408|Homo sapiens nuclear phosphoprotein pr...    30   9.6  
AF280095-1|AAG09826.1|  689|Homo sapiens transcriptional coactiv...    30   9.6  
AF280094-1|AAF99318.1|  539|Homo sapiens transcriptional coactiv...    30   9.6  
AC009950-1|AAX93281.1|  713|Homo sapiens unknown protein.              30   9.6  

>L22343-1|AAD13402.1|  408|Homo sapiens nuclear phosphoprotein
           protein.
          Length = 408

 Score = 29.9 bits (64), Expect = 9.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 97  KRKTKQKDFPNGE*FARHGIEKRL 26
           KR+ K+K  P G   +RHGI+K+L
Sbjct: 86  KRRHKKKSLPRGTASSRHGIQKKL 109


>AF280095-1|AAG09826.1|  689|Homo sapiens transcriptional
           coactivator Sp110 protein.
          Length = 689

 Score = 29.9 bits (64), Expect = 9.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 97  KRKTKQKDFPNGE*FARHGIEKRL 26
           KR+ K+K  P G   +RHGI+K+L
Sbjct: 289 KRRHKKKSLPRGTASSRHGIQKKL 312


>AF280094-1|AAF99318.1|  539|Homo sapiens transcriptional
           coactivator Sp110b protein.
          Length = 539

 Score = 29.9 bits (64), Expect = 9.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 97  KRKTKQKDFPNGE*FARHGIEKRL 26
           KR+ K+K  P G   +RHGI+K+L
Sbjct: 289 KRRHKKKSLPRGTASSRHGIQKKL 312


>AC009950-1|AAX93281.1|  713|Homo sapiens unknown protein.
          Length = 713

 Score = 29.9 bits (64), Expect = 9.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 97  KRKTKQKDFPNGE*FARHGIEKRL 26
           KR+ K+K  P G   +RHGI+K+L
Sbjct: 289 KRRHKKKSLPGGTASSRHGIQKKL 312


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,397,704
Number of Sequences: 237096
Number of extensions: 1746486
Number of successful extensions: 2241
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2241
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8455186714
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)