Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_P11
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036703-4|AAB88555.1|  261|Caenorhabditis elegans Hypothetical ...    30   1.4  
AC024805-10|AAK39342.3| 1058|Caenorhabditis elegans Hypothetical...    29   3.3  
AF101317-1|AAC69234.1|  330|Caenorhabditis elegans Seven tm rece...    28   5.8  

>AF036703-4|AAB88555.1|  261|Caenorhabditis elegans Hypothetical
           protein T11F8.1 protein.
          Length = 261

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 43  RVGQITLHLENLFALFSFYNFKYNEICHHPCF*I-HILHSYLFLNSNWQYKRICKNIPLY 219
           R+G   +   NL AL  FYNF+ + +  +  F + ++  +  +    W+ + +C+ +  Y
Sbjct: 83  RIGTYGIFQNNLLALLIFYNFQNSPLTTYFAFFVSNVTTAMFYFAFIWKMQPMCREMKCY 142


>AC024805-10|AAK39342.3| 1058|Caenorhabditis elegans Hypothetical
           protein Y51H7C.11 protein.
          Length = 1058

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 44  VSGKSLSIWKIFLLCFPFITLSIMKFAITHAF 139
           + G  LS+WK   +  P + LS+  F+ +H F
Sbjct: 744 IQGMRLSMWKKKFISEPLLQLSLQSFSTSHKF 775


>AF101317-1|AAC69234.1|  330|Caenorhabditis elegans Seven tm
           receptor protein 16 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 519 INILKLQFTIPYFSIIVHSFITYFNDFFLLI*SVF 415
           I++L +QF   YF+I    ++ YF  ++ LI  V+
Sbjct: 104 ISLLAVQFLYRYFAIFHEYYLKYFKGWYFLIWIVY 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,178,010
Number of Sequences: 27780
Number of extensions: 302266
Number of successful extensions: 723
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)