Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_P11
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.9  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   3.8  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   3.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.7  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 83  LCFPFITLSIMKFAITHAF 139
           L F FI  +I++FA+ H F
Sbjct: 282 LSFAFIFATIIQFAVVHYF 300


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 103 FKYNEICHHPCF*IHILHSYLFLNSNWQYKRICKNIPLYYPNKIK 237
           F+Y       C  +H+ H+ ++L  +W +     N+  Y  N+IK
Sbjct: 207 FEYAMAVMKMCDILHLRHTKIWLRPDWLF-----NLTKYGKNQIK 246


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 154 HSYLFLNSNWQYKRICKNIPLYYPNKI 234
           ++Y + N+N++Y     N  LYY N I
Sbjct: 320 NNYNYNNNNYKYNYNNYNKKLYYKNYI 346


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -2

Query: 253 GFRNFILFY*DNIRVYFYIYAYIANYCLETNKNAVYEFKSMGDGKFHY 110
           G  N  L + ++I+V    + Y  N  + +NK A+Y + S+   K +Y
Sbjct: 475 GTSNLSLVFPNDIKVD---HEYDQNVWVLSNKLAMYLYGSIDSSKINY 519


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,855
Number of Sequences: 438
Number of extensions: 4117
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)