Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_P10
         (519 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0686 + 6049563-6050900                                           31   0.55 
12_02_0807 - 23341971-23342153,23342300-23342397,23342451-233425...    31   0.73 
11_06_0457 - 23800451-23800576,23801259-23801312,23801390-238015...    27   6.8  
09_06_0089 + 20781086-20782985,20783463-20783538,20783593-207836...    27   9.0  
01_06_0792 - 32031569-32033041,32033124-32033341,32033502-32033568     27   9.0  

>08_01_0686 + 6049563-6050900
          Length = 445

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = +1

Query: 325 KQRRLQNSYKIRLNKICISKLPCLLLSPLRGTGDAPSLSG 444
           ++ ++Q + + +L K+  ++ P L+ +P RGTGD P  +G
Sbjct: 72  QRHQIQANARRKLTKLFPTRAPPLVAAPSRGTGDPPVSTG 111


>12_02_0807 -
           23341971-23342153,23342300-23342397,23342451-23342521,
           23342522-23342634,23342853-23342943,23343037-23343272,
           23343915-23343959,23344113-23344226,23344306-23344369,
           23345036-23345059,23345320-23345483,23345598-23345795
          Length = 466

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -2

Query: 485 HHRSDAPRHGDVSAPLRLGASPVPRSGLSKRHGSLDMHILLSLILY 348
           HHR +       +APL  GA+P+  SG  + H   D+H+L +  L+
Sbjct: 7   HHRDEEEEAA--AAPLLAGAAPLGYSGHRRSHAG-DLHVLSAAFLF 49


>11_06_0457 -
           23800451-23800576,23801259-23801312,23801390-23801539,
           23801919-23802012,23802460-23802567,23802661-23802793,
           23802903-23803139,23803488-23803586,23804968-23804983
          Length = 338

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = +1

Query: 367 KICISKLPCLLLSPLRGTGDAPSLSGAETSPWRGASLRWCSVNII 501
           K+C ++ P ++++ +  + +APS   A   P +G    WC+ + +
Sbjct: 86  KLCKTR-PLVVVAAMEVSKEAPSADFANRQPSKGVLETWCNADAV 129


>09_06_0089 +
           20781086-20782985,20783463-20783538,20783593-20783669,
           20784301-20784405,20784601-20784659
          Length = 738

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -1

Query: 231 SLSRFACTFNYMRISY 184
           SL++FACT NY+R+ +
Sbjct: 532 SLTKFACTENYLRVDH 547


>01_06_0792 - 32031569-32033041,32033124-32033341,32033502-32033568
          Length = 585

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 249 RRSNIASNIQVTSMFYNFFYTK*SLE---ATSITKFIQ 353
           RR N A N++    F+N++YT   L    A+++  +IQ
Sbjct: 160 RRDNSARNVRTLQTFFNWYYTVLGLSIVLASTVIVYIQ 197


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,749,332
Number of Sequences: 37544
Number of extensions: 179851
Number of successful extensions: 376
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)