Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_P09
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     28   1.4  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    28   1.4  
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    28   1.4  
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|...    27   1.9  
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans...    27   1.9  
SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces...    27   1.9  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    27   2.5  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    26   5.7  
SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyc...    25   7.5  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    25   7.5  
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc...    25   7.5  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    25   9.9  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    25   9.9  

>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -3

Query: 338 VFAADNLYVGNKEQSASIVKLMNENWRILMDMVGKQFVEKAMNFV 204
           VF +++L V ++  +  + +L+  N+R L+D     F+E A N +
Sbjct: 742 VFNSEHLAVNDRVSACKLTELLMLNYRGLLDQYVPAFIEVAGNLL 786


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 312 RK*RTKCFHRQAYERKLAYFNGYGRKAIRRE 220
           RK R   +  QA+  +  Y NGYGR++ R E
Sbjct: 125 RKLRCAAYLWQAFTAECMYRNGYGRRSFRIE 155


>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 296 FVLYFRRKGYQLQIPFYLKHRTCISSFQ 379
           F+ YF   GYQ  +P Y K     ++FQ
Sbjct: 319 FISYFNIAGYQASVPIYAKELYHYNAFQ 346


>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 464

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 5   HNQISSLIVRFSLNLNWCXAFFYLQLY 85
           ++Q+ ++    S+N NWC A   LQ+Y
Sbjct: 316 YHQVLNIGTTLSINHNWCNASCILQMY 342


>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -3

Query: 518 LIKNFL--GGDNIHGDGNGKAKIEKFKVAFDFDFTVE 414
           +I+ F+  GGD + GDG G A I   +   D +FT++
Sbjct: 63  IIQGFMIQGGDFVSGDGTGSATIFNSRTFPDENFTLK 99


>SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 265

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/67 (23%), Positives = 32/67 (47%)
 Frame = -3

Query: 308 NKEQSASIVKLMNENWRILMDMVGKQFVEKAMNFVFNFTQKFFSNVPTKNYIVDDLENYV 129
           +K+    I + +N   R    +  +  V + ++   + ++ +  N  TKN +V   E Y 
Sbjct: 77  SKKVKKGIREFLNSQSRFQSLLCSEHNVPRRLHL--SISENYRINYSTKNQLVHKWEQYT 134

Query: 128 SS*NYRT 108
           ++ NYRT
Sbjct: 135 NNLNYRT 141


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -3

Query: 563 DITIKGHYSVYSGSPLIKNFLGGDNIHGDGNGKAKIEK 450
           DI     + V  G      +L     HG G+GKAK EK
Sbjct: 595 DIKYVDEFGVELGPKEAYKYLLSHQFHGKGSGKAKTEK 632


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/53 (22%), Positives = 27/53 (50%)
 Frame = -3

Query: 494 DNIHGDGNGKAKIEKFKVAFDFDFTVEKRGDDLFIKSSIEKMKYTYDVLGKMV 336
           DN+ G      + ++ + A    F  EK+G  L   +++ K  + Y+ +G+++
Sbjct: 162 DNVCGPSCQNQRFQRHEFAKVDVFLTEKKGFGLRADANLPKDTFVYEYIGEVI 214


>SPCC1682.09c |||guanine nucleotide transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 300

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 6/30 (20%)
 Frame = -3

Query: 533 YSGSPLIKNFLGG------DNIHGDGNGKA 462
           YSG P++K+FL        D   G G+GKA
Sbjct: 92  YSGQPIVKDFLNENYRHTFDKTFGKGSGKA 121


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +2

Query: 5   HNQISSLIVRF--SLNLNWCXAFFYLQLYWLY 94
           H  I S I  +  +L++N C  +F++++Y+LY
Sbjct: 409 HQLIRSEIGEYCKTLDINSCREWFWIRIYYLY 440


>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 22/71 (30%), Positives = 33/71 (46%)
 Frame = -3

Query: 428 DFTVEKRGDDLFIKSSIEKMKYTYDVLGKMVFAADNLYVGNKEQSASIVKLMNENWRILM 249
           ++ +E  G      SSIEK K  YD L K      +LY+   E +A     MN  +RI  
Sbjct: 280 EYMLEHGGLVALEASSIEKSKLLYDTLDK-----HDLYISVVEPAAR--SRMNVTFRIEP 332

Query: 248 DMVGKQFVEKA 216
             +  +F+ +A
Sbjct: 333 QELESEFLAEA 343


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -3

Query: 236 KQFVEKAMNFVFNFTQKFFSNVPTKNYIVDDLENYVSS*NYRTSYQSNITNRV 78
           K ++    N +FN  Q  +  V T++ I + L N  +  NY+T +Q  ++NR+
Sbjct: 399 KSWLSHFSNLLFNHGQLKYLPVLTRDEISNYLLNIQAHPNYQTFHQM-LSNRL 450


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 287 WKHFVLYFRRKGYQLQ 334
           W HFVL+ + KGY ++
Sbjct: 813 WYHFVLHCKEKGYLVE 828


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,482,893
Number of Sequences: 5004
Number of extensions: 50951
Number of successful extensions: 153
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)