Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_P09
(673 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0918 + 12381662-12383118,12383249-12384707 29 2.6
05_01_0019 - 129767-129931,130078-130257,130491-130728,130833-13... 29 3.4
02_01_0211 - 1406098-1406227,1406581-1406714,1407241-1407380,140... 29 3.4
06_03_0748 - 24126603-24128038,24128582-24128897 29 4.5
02_05_0490 + 29456825-29457499,29458771-29459057,29460922-294610... 29 4.5
01_06_1168 - 35073599-35073628,35075574-35076993,35077466-35078847 28 5.9
05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948... 28 7.8
>03_02_0918 + 12381662-12383118,12383249-12384707
Length = 971
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Frame = -3
Query: 662 TLVDGVAKGVKDCTVNKFEANFDDLHASIELVCD------ITIKGHYSVYSGSPLIKNFL 501
TL DG +K TV+ + D+ ++++ + +KG+Y S LI F+
Sbjct: 705 TLRDGQPVAIKKLTVSSLVKSQDEFEREVKMLGKLRHRNLVALKGYYWTPSLQLLIYEFV 764
Query: 500 GGDNIH 483
G N+H
Sbjct: 765 SGGNLH 770
>05_01_0019 -
129767-129931,130078-130257,130491-130728,130833-131236,
131284-131427,131709-131995,132071-132150,132563-132714,
132793-132909,133292-133450,133546-133946,134106-134423,
135050-135095,135203-135310
Length = 932
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +3
Query: 186 LLSKVENKIHSFLYELLSDHIH*NTPVFVHKLDDGSTLFFISDVKVISCKYHF 344
++ + NK + L + D H T F++ D FF VK +C+Y+F
Sbjct: 732 MIKNIPNKYNCKLLLAVIDENHRGTYDFIYLPIDFKVYFFFLSVKDCNCEYNF 784
>02_01_0211 -
1406098-1406227,1406581-1406714,1407241-1407380,
1407639-1407829,1408853-1409346
Length = 362
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +1
Query: 271 FISLTMEALCSLFPT*RLSAANTILPKTSYVYFIFSMLLLMNKSSPRFSTVKS 429
F+S A+C+L P L + + T + F+ ++ LL+ + +PRF+ + S
Sbjct: 148 FVSRVCSAICALMPILTLYYGHMDVTVT-FSAFLIAISLLLQRGNPRFAQLTS 199
>06_03_0748 - 24126603-24128038,24128582-24128897
Length = 583
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 261 AYFNGYGRKAIRRESYEFCFQLYSEVLQQCSH 166
A +GY +K + E+ + QLYSE + QC+H
Sbjct: 182 AIISGYAQKGLDEEALDLFRQLYSEGM-QCNH 212
>02_05_0490 +
29456825-29457499,29458771-29459057,29460922-29461039,
29461451-29461972,29462058-29462170,29463033-29463053,
29463726-29463960,29464218-29464381,29464695-29464776,
29465077-29465166,29465625-29465858,29466347-29466418,
29466857-29467000,29467573-29467659,29467940-29468098,
29469216-29469476,29469789-29469836
Length = 1103
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = -2
Query: 297 KCFHRQAYERKLAYFNGYGRKAIRRESY---EFCFQLYSEVLQQCS 169
KC + E LAY +G +KA+ ++ Y E+ + E QQC+
Sbjct: 640 KCISSKYKEGDLAYVSGKIKKALTKDHYDLREYTIDMLEEEEQQCT 685
>01_06_1168 - 35073599-35073628,35075574-35076993,35077466-35078847
Length = 943
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Frame = -3
Query: 659 LVDGVAKGVKDCTVNKFEANFDDLHASIELVCDI------TIKGHYSVYSGSPLIKNFLG 498
L DG +K TV+ + DD ++L+ + ++G Y S LI ++L
Sbjct: 682 LRDGQPVAIKKLTVSSLVKSKDDFERQVKLLSKVRHHNVVALRGFYWTSSLQLLIYDYLP 741
Query: 497 GDNIH 483
G N+H
Sbjct: 742 GGNLH 746
>05_06_0132 +
25893241-25893435,25894266-25894487,25894567-25894863,
25894944-25895111,25895201-25895368,25895456-25895536,
25895704-25895770,25895874-25895971,25896587-25896659,
25896753-25896823,25896919-25896968,25897698-25897810,
25898182-25898300,25898629-25898721,25899025-25899051,
25899422-25899823,25900467-25900513,25900612-25900651,
25900733-25900795,25900881-25901018,25901873-25902031,
25902111-25902164,25902324-25902392,25902514-25902643,
25902909-25902949,25903133-25903178,25903200-25903357,
25903560-25903605,25903702-25903853,25904022-25904243
Length = 1202
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 419 VEKRGDDLFIKSSIEKMKYTYDVL 348
VE G ++F +S E+M YTYD L
Sbjct: 187 VEAIGGNVFASASREQMSYTYDAL 210
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,434,840
Number of Sequences: 37544
Number of extensions: 277599
Number of successful extensions: 684
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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