Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_P09
(673 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40938-4|AAK68283.1| 447|Caenorhabditis elegans Cyclophilin fam... 31 0.75
U40938-3|AAA81696.1| 466|Caenorhabditis elegans Cyclophilin fam... 31 0.75
U31078-1|AAC47130.1| 466|Caenorhabditis elegans cyclophilin iso... 31 0.75
Z48055-8|CAA88133.2| 379|Caenorhabditis elegans Hypothetical pr... 31 0.99
U42436-7|AAO61428.2| 223|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z19158-1|CAA79574.1| 788|Caenorhabditis elegans Hypothetical pr... 28 5.3
Z70781-7|CAJ55254.1| 380|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z70781-6|CAA94831.2| 349|Caenorhabditis elegans Hypothetical pr... 27 9.2
Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical pr... 27 9.2
U80448-8|AAB37821.3| 1014|Caenorhabditis elegans Hypothetical pr... 27 9.2
AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical ... 27 9.2
>U40938-4|AAK68283.1| 447|Caenorhabditis elegans Cyclophilin family
protein 8, isoformb protein.
Length = 447
Score = 31.1 bits (67), Expect = 0.75
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
Frame = -3
Query: 554 IKGHYSVYSGSP---LIKNFL--GGDNIHGDGNG 468
+ GHY+ Y GS +IK F+ GGD HG+G G
Sbjct: 52 MNGHYASYQGSVFHRVIKGFMIQGGDITHGNGTG 85
>U40938-3|AAA81696.1| 466|Caenorhabditis elegans Cyclophilin family
protein 8, isoforma protein.
Length = 466
Score = 31.1 bits (67), Expect = 0.75
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
Frame = -3
Query: 554 IKGHYSVYSGSP---LIKNFL--GGDNIHGDGNG 468
+ GHY+ Y GS +IK F+ GGD HG+G G
Sbjct: 52 MNGHYASYQGSVFHRVIKGFMIQGGDITHGNGTG 85
>U31078-1|AAC47130.1| 466|Caenorhabditis elegans cyclophilin
isoform 8 protein.
Length = 466
Score = 31.1 bits (67), Expect = 0.75
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
Frame = -3
Query: 554 IKGHYSVYSGSP---LIKNFL--GGDNIHGDGNG 468
+ GHY+ Y GS +IK F+ GGD HG+G G
Sbjct: 52 MNGHYASYQGSVFHRVIKGFMIQGGDITHGNGTG 85
>Z48055-8|CAA88133.2| 379|Caenorhabditis elegans Hypothetical
protein T07A5.1 protein.
Length = 379
Score = 30.7 bits (66), Expect = 0.99
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 53 WCXAFFYLQLYWLYCSDKKFCSFNY*HN-FPNHPRYNS*W 169
WC A + L+W+ CS +K F Y + + +HP W
Sbjct: 315 WCAADLHGHLFWVTCSPQKMLVFEYGNLWYEDHPSSQYDW 354
>U42436-7|AAO61428.2| 223|Caenorhabditis elegans Hypothetical
protein C49H3.4 protein.
Length = 223
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 659 LVDGVAKGVKDCTVNKFEANFDDLHASI-ELVCD 561
L++GV +D ++FE N DLH + E +CD
Sbjct: 21 LIEGVEGNSEDFKTDEFEKNLVDLHPELAEEICD 54
>Z19158-1|CAA79574.1| 788|Caenorhabditis elegans Hypothetical
protein T23G5.1 protein.
Length = 788
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 587 HASIELVCDIT-IKGHYSVYSGSPLIKNFLGGD 492
+A++E C++ + G YS Y GSP+ K L D
Sbjct: 543 YAALEASCELAELNGPYSTYEGSPVSKGQLQFD 575
>Z70781-7|CAJ55254.1| 380|Caenorhabditis elegans Hypothetical
protein F57A8.2b protein.
Length = 380
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = -3
Query: 485 HGDGNGKAKIEKFKVAFDFDFTVEKRGDDLFIKSSIEKM-KYTYDVLGKMVFAADNLYVG 309
+G NG + ++ D K+ F + EK+ KY K FA DN YVG
Sbjct: 80 YGQNNGFGGFQPQQLMSDPMLNAAKQFGGQFAEQQKEKLTKYLGTFNLKYYFAVDNAYVG 139
Query: 308 NK 303
K
Sbjct: 140 KK 141
>Z70781-6|CAA94831.2| 349|Caenorhabditis elegans Hypothetical
protein F57A8.2a protein.
Length = 349
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = -3
Query: 485 HGDGNGKAKIEKFKVAFDFDFTVEKRGDDLFIKSSIEKM-KYTYDVLGKMVFAADNLYVG 309
+G NG + ++ D K+ F + EK+ KY K FA DN YVG
Sbjct: 80 YGQNNGFGGFQPQQLMSDPMLNAAKQFGGQFAEQQKEKLTKYLGTFNLKYYFAVDNAYVG 139
Query: 308 NK 303
K
Sbjct: 140 KK 141
>Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical
protein T08A11.1 protein.
Length = 1872
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 375 FNAAFNE*IISSFFYGEIEIKCNFELFYFRF 467
F+ F+ I + EI+ CNF+LFYF F
Sbjct: 118 FSILFSFLGIFMMLHFEIQSFCNFDLFYFSF 148
>U80448-8|AAB37821.3| 1014|Caenorhabditis elegans Hypothetical
protein F59A3.1 protein.
Length = 1014
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +3
Query: 165 SGNIAEELLSKVENKIHSFLYELLSDHIH*NTPVFVHKLDDGSTLFFISDV 317
SG L++ VE + + YE++S + + +T + D STL F+ ++
Sbjct: 680 SGKPPYTLIAAVEKRTEAMAYEMMSTYCNPDTKSEFSDILDESTLVFMPEI 730
>AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical
protein T08A11.1 protein.
Length = 1872
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 375 FNAAFNE*IISSFFYGEIEIKCNFELFYFRF 467
F+ F+ I + EI+ CNF+LFYF F
Sbjct: 118 FSILFSFLGIFMMLHFEIQSFCNFDLFYFSF 148
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,360,064
Number of Sequences: 27780
Number of extensions: 273709
Number of successful extensions: 806
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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