Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_P09
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    33   0.003
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   6.1  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 32.7 bits (71), Expect = 0.003
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
 Frame = -3

Query: 476 GNGKAKIEKFKVAFDFDFTVEK--RGDDLFIKSSIEKMKYTYDVLGKMVFAADNLYVGNK 303
           G GK+ I  + +    D   EK  +  + +++     +K+      K+    +NL+ GNK
Sbjct: 144 GAGKSNITMYDLKSHNDIYCEKYEKNGETYLRIKKHAVKFNP---AKVKLRFENLFDGNK 200

Query: 302 EQSASIVKLMNENWRILMDMVGKQFVEKAMNFVF-NFTQKFFSNVP 168
           E    + + +NEN  +L   +   + E+  + VF     + F+ VP
Sbjct: 201 ELGEQMNRFINENSELLFKELQAAY-EETFSLVFTKIDNEIFNRVP 245


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 165 SGNIAEELLSKVENKIHSFLYELLSDH 245
           +G I  EL +  + ++H      LSDH
Sbjct: 105 NGKILRELQTDYDRRLHDNSPSFLSDH 131


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,286
Number of Sequences: 438
Number of extensions: 3422
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)