Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_P07
         (345 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   1.3  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   5.4  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    20   7.2  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               20   9.5  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 290 TLYHAVRTIKIGKTVQFI 343
           T   A+R IKIGK + FI
Sbjct: 720 TAEEAIRDIKIGKLMAFI 737


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +1

Query: 187 FAMVATHCLLEEPRCNLA 240
           + + A HC+++E    LA
Sbjct: 197 YVLTAAHCIIDENTTKLA 214


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 6/33 (18%), Positives = 18/33 (54%)
 Frame = -1

Query: 210 TVRRYHGESHFKPPTMDELPVPKGSWQSHHDAN 112
           T+  + G  +F      E+P+ +  W++ ++++
Sbjct: 321 TLLEFAGVHYFTKVGSGEIPLEEEEWENENESD 353


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 5/17 (29%), Positives = 12/17 (70%)
 Frame = +3

Query: 285 YTLCITQYALLKLEKLS 335
           +TLCI  Y +++ + ++
Sbjct: 9   FTLCIVSYMMVRCDDIT 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,112
Number of Sequences: 438
Number of extensions: 1785
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)