Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_P04
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0050 - 19245087-19245113,19245306-19245449,19245546-192456...    30   1.5  
11_06_0229 + 21512943-21513237,21513273-21513756,21514668-21516657     29   3.4  

>02_04_0050 -
           19245087-19245113,19245306-19245449,19245546-19245637,
           19245733-19245811,19245902-19245968,19246084-19246175,
           19246267-19246383,19246472-19246583,19246884-19246990,
           19247113-19247189,19247351-19247432,19247526-19247663,
           19248176-19248234,19249155-19249233
          Length = 423

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +3

Query: 12  LFWYFYLLNISXFLNLTMNPFYTELDFYXYTIL*VPLQYFSIHAIYXYALL 164
           L+   Y L  S    L     YT +D Y +  L +P+++   HA+  Y L+
Sbjct: 344 LYTISYALATSGAAGLLFAGIYTLVDVYGFRKLTIPMEWMGKHALMIYVLV 394


>11_06_0229 + 21512943-21513237,21513273-21513756,21514668-21516657
          Length = 922

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +2

Query: 311 NKYI*HTRQSLTFHYYDIQLIIRFKTISIHFYQFFEDLDVSK 436
           N+ + +TR+ L+F YYD+ L +  KT  +H   + ED  + K
Sbjct: 398 NEVVHNTRKILSFSYYDLPLYL--KTCMLHLSIYPEDHLIEK 437


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,414,849
Number of Sequences: 37544
Number of extensions: 228609
Number of successful extensions: 267
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)