Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_P03
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0311 + 33054022-33054118,33056109-33056353,33057058-330573...    29   3.9  
10_08_0237 - 16085539-16086120                                         28   5.2  
04_04_0118 - 22889608-22890816,22891990-22892261,22892306-228931...    28   6.8  
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    28   6.8  
01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982           28   6.8  
11_01_0142 - 1169007-1169032,1169351-1169538,1169978-1170131,117...    27   9.0  

>03_06_0311 + 33054022-33054118,33056109-33056353,33057058-33057398,
            33057488-33057538,33057623-33057695,33058229-33058333,
            33060124-33060206,33061209-33061249,33061659-33063120,
            33063368-33064847,33064958-33065122,33065232-33065424,
            33065502-33065613,33065702-33065849,33065951-33066148,
            33066234-33066512,33066612-33066773,33066872-33067090,
            33067481-33067612
          Length = 1861

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 233  PSCVAHTFVCNFYSDPAHGSVDSL 304
            P+ V H F C +  DPA+G++  L
Sbjct: 1359 PAVVEHVFCCEYLYDPANGALKQL 1382


>10_08_0237 - 16085539-16086120
          Length = 193

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 614 SPYASNSYGGSNPYAPSTGGSGG 546
           S Y+SN YG    Y+ S GGSGG
Sbjct: 98  SQYSSNYYGSGGEYS-SAGGSGG 119


>04_04_0118 - 22889608-22890816,22891990-22892261,22892306-22893131,
            22893311-22893534,22893620-22893936,22894035-22894294,
            22894723-22894923,22895015-22895190,22895445-22895718
          Length = 1252

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 264  IFILILRMVLLIA*RISLRVRTPRIG-AVRGVVRILHYRSRID 389
            +F++++     +A  +SL     R G ++R V  IL+YR+RID
Sbjct: 952  VFVVLVITANTVAETVSLAPEIVRGGESIRSVFAILNYRTRID 994


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 541  LLPPDPPVLGAYGLDPP 591
            L PP PP LG YG+ PP
Sbjct: 1084 LPPPLPPTLGDYGVAPP 1100


>01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982
          Length = 301

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = -1

Query: 614 SPYASNSYGGSNPYAPSTGGS-GGKSPLDS 528
           +P     YG S P  PS GG  GG SP  S
Sbjct: 109 APSHGGGYGASPPVTPSPGGGYGGGSPAPS 138


>11_01_0142 -
           1169007-1169032,1169351-1169538,1169978-1170131,
           1170565-1170656,1170782-1170961,1171080-1171244,
           1171309-1171709
          Length = 401

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 105 NIINYIFIKLGPYNILNILMYQVRQDHSHTNGPPVA 212
           N ++ I +  GP N+L  ++ +VR D ++   PP+A
Sbjct: 35  NEMDMIHLACGPDNLLQSIIAKVRTDLTNKPSPPMA 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,763,209
Number of Sequences: 37544
Number of extensions: 219902
Number of successful extensions: 727
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)