Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_P03
         (617 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

J05249-1|AAA36560.1|  270|Homo sapiens protein ( Human replicati...    31   4.3  
DQ001128-1|AAX84514.1|  270|Homo sapiens replication protein A2,...    31   4.3  
CR450348-1|CAG29344.1|  270|Homo sapiens RPA2 protein.                 31   4.3  
BC021257-1|AAH21257.1|  270|Homo sapiens replication protein A2,...    31   4.3  
BC012157-1|AAH12157.1|  270|Homo sapiens replication protein A2,...    31   4.3  
BC001630-1|AAH01630.1|  270|Homo sapiens replication protein A2,...    31   4.3  
AL109927-12|CAI21778.1|  278|Homo sapiens replication protein A2...    31   4.3  
AL109927-11|CAI21777.1|  270|Homo sapiens replication protein A2...    31   4.3  
AL109927-10|CAI21776.1|  179|Homo sapiens replication protein A2...    31   4.3  
AL109927-9|CAI21775.1|  358|Homo sapiens replication protein A2,...    31   4.3  
U00968-1|AAC50051.2| 1147|Homo sapiens SREBP-1 protein.                29   9.9  
BC063281-1|AAH63281.1| 1177|Homo sapiens sterol regulatory eleme...    29   9.9  
BC057388-1|AAH57388.1| 1147|Homo sapiens sterol regulatory eleme...    29   9.9  

>J05249-1|AAA36560.1|  270|Homo sapiens protein ( Human replication
           protein A 32-kDa subunit mRNA, complete cds. ).
          Length = 270

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 608 YASNSYGGSNPYAPSTGGSGGKSP 537
           Y S+SYGG+  Y  S GG G  +P
Sbjct: 9   YGSSSYGGAGGYTQSPGGFGSPAP 32


>DQ001128-1|AAX84514.1|  270|Homo sapiens replication protein A2,
           32kDa protein.
          Length = 270

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 608 YASNSYGGSNPYAPSTGGSGGKSP 537
           Y S+SYGG+  Y  S GG G  +P
Sbjct: 9   YGSSSYGGAGGYTQSPGGFGSPAP 32


>CR450348-1|CAG29344.1|  270|Homo sapiens RPA2 protein.
          Length = 270

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 608 YASNSYGGSNPYAPSTGGSGGKSP 537
           Y S+SYGG+  Y  S GG G  +P
Sbjct: 9   YGSSSYGGAGGYTQSPGGFGSPAP 32


>BC021257-1|AAH21257.1|  270|Homo sapiens replication protein A2,
           32kDa protein.
          Length = 270

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 608 YASNSYGGSNPYAPSTGGSGGKSP 537
           Y S+SYGG+  Y  S GG G  +P
Sbjct: 9   YGSSSYGGAGGYTQSPGGFGSPAP 32


>BC012157-1|AAH12157.1|  270|Homo sapiens replication protein A2,
           32kDa protein.
          Length = 270

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 608 YASNSYGGSNPYAPSTGGSGGKSP 537
           Y S+SYGG+  Y  S GG G  +P
Sbjct: 9   YGSSSYGGAGGYTQSPGGFGSPAP 32


>BC001630-1|AAH01630.1|  270|Homo sapiens replication protein A2,
           32kDa protein.
          Length = 270

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 608 YASNSYGGSNPYAPSTGGSGGKSP 537
           Y S+SYGG+  Y  S GG G  +P
Sbjct: 9   YGSSSYGGAGGYTQSPGGFGSPAP 32


>AL109927-12|CAI21778.1|  278|Homo sapiens replication protein A2,
           32kDa protein.
          Length = 278

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 608 YASNSYGGSNPYAPSTGGSGGKSP 537
           Y S+SYGG+  Y  S GG G  +P
Sbjct: 17  YGSSSYGGAGGYTQSPGGFGSPAP 40


>AL109927-11|CAI21777.1|  270|Homo sapiens replication protein A2,
           32kDa protein.
          Length = 270

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 608 YASNSYGGSNPYAPSTGGSGGKSP 537
           Y S+SYGG+  Y  S GG G  +P
Sbjct: 9   YGSSSYGGAGGYTQSPGGFGSPAP 32


>AL109927-10|CAI21776.1|  179|Homo sapiens replication protein A2,
           32kDa protein.
          Length = 179

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 608 YASNSYGGSNPYAPSTGGSGGKSP 537
           Y S+SYGG+  Y  S GG G  +P
Sbjct: 13  YGSSSYGGAGGYTQSPGGFGSPAP 36


>AL109927-9|CAI21775.1|  358|Homo sapiens replication protein A2,
           32kDa protein.
          Length = 358

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 608 YASNSYGGSNPYAPSTGGSGGKSP 537
           Y S+SYGG+  Y  S GG G  +P
Sbjct: 97  YGSSSYGGAGGYTQSPGGFGSPAP 120


>U00968-1|AAC50051.2| 1147|Homo sapiens SREBP-1 protein.
          Length = 1147

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 611 PYASNSYGGSNPYAPSTGGSGGKSP 537
           PYA +  GG++P +P T   G  SP
Sbjct: 50  PYAGSGAGGTDPASPDTSSPGSLSP 74


>BC063281-1|AAH63281.1| 1177|Homo sapiens sterol regulatory element
           binding transcription factor 1 protein.
          Length = 1177

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 611 PYASNSYGGSNPYAPSTGGSGGKSP 537
           PYA +  GG++P +P T   G  SP
Sbjct: 80  PYAGSGAGGTDPASPDTSSPGSLSP 104


>BC057388-1|AAH57388.1| 1147|Homo sapiens sterol regulatory element
           binding transcription factor 1 protein.
          Length = 1147

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 611 PYASNSYGGSNPYAPSTGGSGGKSP 537
           PYA +  GG++P +P T   G  SP
Sbjct: 50  PYAGSGAGGTDPASPDTSSPGSLSP 74


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,572,351
Number of Sequences: 237096
Number of extensions: 1198789
Number of successful extensions: 6568
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6566
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6635341780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)