Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_P03
(617 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75531-4|CAA99805.1| 408|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z46343-8|CAA86461.1| 549|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z35598-9|CAA84658.1| 549|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z71185-6|CAI46563.1| 286|Caenorhabditis elegans Hypothetical pr... 28 4.6
AF039050-2|AAC47935.1| 499|Caenorhabditis elegans Cytochrome p4... 28 6.1
Z81594-2|CAB04746.1| 416|Caenorhabditis elegans Hypothetical pr... 27 8.1
U58764-3|AAB00725.1| 122|Caenorhabditis elegans Hypothetical pr... 27 8.1
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 27 8.1
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 27 8.1
AL110478-4|CAB54346.1| 546|Caenorhabditis elegans Hypothetical ... 27 8.1
AC006757-2|AAF60543.1| 416|Caenorhabditis elegans Hypothetical ... 27 8.1
>Z75531-4|CAA99805.1| 408|Caenorhabditis elegans Hypothetical
protein C54D10.4 protein.
Length = 408
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 293 QNHAQDQNKNYRQTYAQHNWATTRKPVSYGWTVSVTVVLTYLIHQYV 153
+NHA +KN +T A + KP S T+ V + L++QY+
Sbjct: 229 KNHAYKYHKNLNETIANDTGKPSVKPRSTNITIKHLPVTSSLMNQYL 275
>Z46343-8|CAA86461.1| 549|Caenorhabditis elegans Hypothetical
protein F10F2.9 protein.
Length = 549
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -1
Query: 602 SNSYGGSNPYAPSTGGSGG 546
SN++GGSN + S GGSGG
Sbjct: 336 SNNWGGSNGGSGSNGGSGG 354
>Z35598-9|CAA84658.1| 549|Caenorhabditis elegans Hypothetical
protein F10F2.9 protein.
Length = 549
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -1
Query: 602 SNSYGGSNPYAPSTGGSGG 546
SN++GGSN + S GGSGG
Sbjct: 336 SNNWGGSNGGSGSNGGSGG 354
>Z71185-6|CAI46563.1| 286|Caenorhabditis elegans Hypothetical
protein C35A5.10 protein.
Length = 286
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -1
Query: 614 SPYASNSYGGS-NPYAPSTGG 555
+PY +N+Y G+ NPY S GG
Sbjct: 125 NPYINNNYNGNYNPYGTSNGG 145
>AF039050-2|AAC47935.1| 499|Caenorhabditis elegans Cytochrome p450
family protein 34A5 protein.
Length = 499
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 144 NILNILMYQVRQDHSHTNGPPVADG 218
+ILN+ +++ Q+ SH +G P+A G
Sbjct: 371 SILNVNIFRQLQEDSHIDGQPIASG 395
>Z81594-2|CAB04746.1| 416|Caenorhabditis elegans Hypothetical
protein T20F10.4 protein.
Length = 416
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -1
Query: 233 ATTRKPVSYGWTVSVTVVLTYLIHQYVQN 147
+T K ++GW + ++TY I++Y +N
Sbjct: 124 STMNKQNTFGWILETKDIMTYKINKYTKN 152
>U58764-3|AAB00725.1| 122|Caenorhabditis elegans Hypothetical
protein M03E7.2 protein.
Length = 122
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = -1
Query: 614 SPYASNSYGGSNPYA--PSTGGSGGKSP 537
SPY GG +PY GG GG SP
Sbjct: 66 SPYGMGGMGGMSPYGMMGPMGGMGGMSP 93
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -2
Query: 298 INRTMRRIRIKITDKRMRNTTGLPLVSPSATGG 200
I +TM+ I +KI D N T P V PS GG
Sbjct: 164 IQKTMQPIEVKIEDSEGSN-TAQPSVLPSCGGG 195
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -2
Query: 298 INRTMRRIRIKITDKRMRNTTGLPLVSPSATGG 200
I +TM+ I +KI D N T P V PS GG
Sbjct: 164 IQKTMQPIEVKIEDSEGSN-TAQPSVLPSCGGG 195
>AL110478-4|CAB54346.1| 546|Caenorhabditis elegans Hypothetical
protein Y26D4A.10 protein.
Length = 546
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -1
Query: 233 ATTRKPVSYGWTVSVTVVLTYLIHQYVQN 147
+T K ++GW + ++TY I++Y +N
Sbjct: 124 STMNKQNTFGWILETKDIMTYKINKYTKN 152
>AC006757-2|AAF60543.1| 416|Caenorhabditis elegans Hypothetical
protein Y40C7B.3 protein.
Length = 416
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -1
Query: 233 ATTRKPVSYGWTVSVTVVLTYLIHQYVQN 147
+T K ++GW + ++TY I++Y +N
Sbjct: 124 STMNKQNTFGWILETKDIMTYKINKYTKN 152
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,056,943
Number of Sequences: 27780
Number of extensions: 192051
Number of successful extensions: 590
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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