Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_P02
         (699 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   2.4  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    23   2.4  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    23   2.4  
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    23   3.2  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   9.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   9.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   9.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   9.7  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 485 YHHVPRYRRQDAEGDHRPR 429
           Y H+ RY+ +  +GD R R
Sbjct: 159 YQHLHRYKEEALQGDGRMR 177


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 485 YHHVPRYRRQDAEGDHRPR 429
           Y H+ RY+ +  +GD R R
Sbjct: 159 YQHLHRYKEEALQGDGRMR 177


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 485 YHHVPRYRRQDAEGDHRPR 429
           Y H+ RY+ +  +GD R R
Sbjct: 159 YQHLHRYKEEALQGDGRMR 177


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 535 DVDIRKDLYANTVMSGGTTMYPGI 464
           D D+ KD     V+ GG+T  P I
Sbjct: 150 DADMTKDQIDEIVLVGGSTRIPKI 173


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 699 PPPPPSRSXTNFLTVR 652
           PPPPP R  +   TVR
Sbjct: 732 PPPPPPRVESFAETVR 747


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 117  FYINLISFLFLLYTRDRCGSQRQM 46
            FY N+I  LF +     C S  Q+
Sbjct: 947  FYYNIIPILFFMLVCFTCKSNIQL 970


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 117  FYINLISFLFLLYTRDRCGSQRQM 46
            FY N+I  LF +     C S  Q+
Sbjct: 947  FYYNIIPILFFMLVCFTCKSNIQL 970


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 117  FYINLISFLFLLYTRDRCGSQRQM 46
            FY N+I  LF +     C S  Q+
Sbjct: 947  FYYNIIPILFFMLVCFTCKSNIQL 970


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 117  FYINLISFLFLLYTRDRCGSQRQM 46
            FY N+I  LF +     C S  Q+
Sbjct: 947  FYYNIIPILFFMLVCFTCKSNIQL 970


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,421
Number of Sequences: 336
Number of extensions: 3188
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)