Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_P01
         (672 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    26   0.32 
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    24   0.99 
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    22   4.0  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    22   4.0  

>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +1

Query: 325 LIMFSTCEQTVLTAASSFLD--PNHFSTFRRRGFTMRMSTAKCLKFLL 462
           L+MFS  +    T         PN ++ F  + +T +    KC+K+L+
Sbjct: 11  LLMFSYTDNVSSTRTKYLRTNFPNFYNDFEVQRYTWKCENQKCVKYLV 58


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 15/66 (22%), Positives = 29/66 (43%)
 Frame = -2

Query: 227 RNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIKK 48
           R  +G   I   + A G T V   +QK   + +GN      +  ++  +    K+ ++  
Sbjct: 298 RGMMGYNEIVEAQNAGGWTTVWDDEQKTPYMYKGNQWVGYDNPKSIAIKVQYAKSLNLAG 357

Query: 47  VLGWSL 30
           V+ WS+
Sbjct: 358 VMIWSI 363


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 51  LDILILDCSRLLNESSRARDIFQRVA 128
           L ILIL C R+ +E  +  ++ +++A
Sbjct: 303 LIILILQCGRVRSEVVKILNVLKKIA 328


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 51  LDILILDCSRLLNESSRARDIFQRVA 128
           L ILIL C R+ +E  +  ++ +++A
Sbjct: 229 LIILILQCGRVRSEVVKILNVLKKIA 254


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,019
Number of Sequences: 336
Number of extensions: 3352
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)