Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_P01
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044    214   6e-56
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...   206   9e-54

>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score =  214 bits (522), Expect = 6e-56
 Identities = 100/175 (57%), Positives = 136/175 (77%), Gaps = 1/175 (0%)
 Frame = -2

Query: 563 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-RLLKVEKWF 387
           MK I+A++ ++IP+G+TV V +++VTV+GPRG L RNFKHL +D +++   R L+V+ WF
Sbjct: 1   MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWF 60

Query: 386 GSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEK 207
           G+++ +AA+RT  SHV+N+I GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK
Sbjct: 61  GTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEK 120

Query: 206 YIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIKKVL 42
            +R+V M  GVT++ S K KDEL+++GN +E VS SAALI Q   VKNKDI+K L
Sbjct: 121 KVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFL 175



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = -3

Query: 52  RKFLDGLYVSEKTTV 8
           RKFLDG+YVS+K T+
Sbjct: 172 RKFLDGIYVSDKGTI 186


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score =  206 bits (504), Expect = 9e-54
 Identities = 97/168 (57%), Positives = 129/168 (76%), Gaps = 3/168 (1%)
 Frame = -2

Query: 536 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP---RLLKVEKWFGSKKELA 366
           ++IP G+TVHV +++VTV+GPRG L RNFKHL +D +++     R L+V+ WFG+++ +A
Sbjct: 1   MEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMA 60

Query: 365 AVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKM 186
           A+RT  SHV+N+I GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +R+V M
Sbjct: 61  AIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDM 120

Query: 185 APGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIKKVL 42
             GVT++ S K KDEL+++GN +E VS SAALI Q   VKNKDI+K L
Sbjct: 121 LEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFL 168



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/15 (73%), Positives = 14/15 (93%)
 Frame = -3

Query: 52  RKFLDGLYVSEKTTV 8
           RKFLDG+YVS+K T+
Sbjct: 165 RKFLDGIYVSDKGTI 179


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,906,110
Number of Sequences: 37544
Number of extensions: 369450
Number of successful extensions: 812
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)