Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_P01
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...   215   2e-56
U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical pr...    31   0.75 
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    31   0.75 
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ...    28   6.9  
Z69884-8|CAA93752.2|  582|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AY090484-1|AAM11893.1|  582|Caenorhabditis elegans low-affinity ...    27   9.2  
AL132948-46|CAD31837.2|  473|Caenorhabditis elegans Hypothetical...    27   9.2  
AC024882-5|AAF60932.1|  666|Caenorhabditis elegans Hypothetical ...    27   9.2  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score =  215 bits (526), Expect = 2e-56
 Identities = 98/174 (56%), Positives = 130/174 (74%)
 Frame = -2

Query: 563 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 384
           MK I +N  V  P+G+T  VK+R+V V GPRG ++++F+HL +++  +    L+V KWFG
Sbjct: 1   MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFG 60

Query: 383 SKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKY 204
            +KELAA+RTVCSH++NMIKGVT GF+YKMR+VYAHFPIN    +GN  +EIRNFLGEK 
Sbjct: 61  VRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKI 120

Query: 203 IRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIKKVL 42
           +RRV +  GV    S  QKDE+++EGN ++ VS +AA IQQST VK KDI+K L
Sbjct: 121 VRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAVKEKDIRKFL 174



 Score = 34.7 bits (76), Expect = 0.061
 Identities = 14/16 (87%), Positives = 16/16 (100%)
 Frame = -3

Query: 52  RKFLDGLYVSEKTTVV 5
           RKFLDG+YVSEKTT+V
Sbjct: 171 RKFLDGIYVSEKTTIV 186


>U10401-7|AAA19056.1|  504|Caenorhabditis elegans Hypothetical
           protein T20B12.3 protein.
          Length = 504

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 313 LVTPLIMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCL 450
           L  P +++ + ++++LT   SFL   H  T+    F  R+S  +CL
Sbjct: 275 LTNPSLLYMSQKESILTLLDSFLSSTHLPTYITASFLKRLS--RCL 318


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
           protein Y47G6A.29 protein.
          Length = 2460

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
 Frame = -2

Query: 446 HLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVC---SHVENMIKGVT--KGFQYKMRAVY 282
           H+  D++++  +   ++ WF   ++L ++RT C   S ++  I  +T  KGF + M+A +
Sbjct: 361 HVKHDVKIILTKETCMDIWFMRGEQLESIRTRCGPLSSLDMSILWITTEKGFYWNMKAEF 420

Query: 281 AHF 273
            +F
Sbjct: 421 LNF 423


>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
            protein D1007.15 protein.
          Length = 1184

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = -2

Query: 320  VTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 183
            ++  F Y + +++  FPI C+  +   I+ +   +G  Y+R V ++
Sbjct: 1085 LSSSFVYGLSSLWYEFPIKCLLWDAAVIVCLITQIGYSYLRGVHLS 1130


>Z69884-8|CAA93752.2|  582|Caenorhabditis elegans Hypothetical
           protein F31F6.6 protein.
          Length = 582

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 46  TFLISLFLTVVDC*MRAAELETSSKELPSMISSSFCFGELTTVTPGAI 189
           T + S+F+ +V    R+ E++  +  LP  IS+SF F       P AI
Sbjct: 461 TVIASIFIPIVAELARSLEIDPLNFMLPVTISASFAFLLPVATPPNAI 508


>Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical
           protein T01H3.2 protein.
          Length = 980

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 180 RCHLYPSDVFLTQEVTYLNN*ITLSGD-TVNGEVSIHSTHLVLEAF 314
           RC L   ++F +  +T LNN + + GD +++  +   S   VL  F
Sbjct: 477 RCQLMQGELFRSVNITILNNNLQIYGDNSLSKSIDTSSIKSVLPCF 522


>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
           protein M110.4b protein.
          Length = 1155

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 435 NSQVFEVPFENSAGPFNCHQTRFHMDR 515
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
           protein M110.4a protein.
          Length = 1156

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 435 NSQVFEVPFENSAGPFNCHQTRFHMDR 515
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


>AY090484-1|AAM11893.1|  582|Caenorhabditis elegans low-affinity
           dicarboxylate transporterINDY1 protein.
          Length = 582

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 46  TFLISLFLTVVDC*MRAAELETSSKELPSMISSSFCFGELTTVTPGAI 189
           T + S+F+ +V    R+ E++  +  LP  IS+SF F       P AI
Sbjct: 461 TVIASIFIPIVAELARSLEIDPLNFMLPVTISASFAFLLPVATPPNAI 508


>AL132948-46|CAD31837.2|  473|Caenorhabditis elegans Hypothetical
           protein Y39B6A.27 protein.
          Length = 473

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = +1

Query: 25  IHKDHPRTFLISLFLTVVDC*MRAAELETSSKELPSMISSSFCFGELTTVTPGAIFTLLM 204
           I   +P  F+IS F  + DC + +      +  +PS  S SF    +  +      T+  
Sbjct: 354 ISHSYPLIFIISFFCGMSDCCINSVRSVICALVMPSRRSQSFA---VARMYHAFACTICF 410

Query: 205 YFSPK-KLRISIIELPSV 255
           +FSP   L    + LPS+
Sbjct: 411 FFSPMVPLYFYTLGLPSL 428


>AC024882-5|AAF60932.1|  666|Caenorhabditis elegans Hypothetical
           protein Y9C9A.8 protein.
          Length = 666

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +2

Query: 581 HKSRKKINSFKFPIVSRIKY 640
           HKS KKI ++K+ I +R++Y
Sbjct: 32  HKSPKKIGNYKYLIENRVRY 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,682,694
Number of Sequences: 27780
Number of extensions: 336054
Number of successful extensions: 832
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)