Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_O23
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078781-4|AAC26918.1|  255|Caenorhabditis elegans Hypothetical ...    29   1.6  
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ...    27   6.5  
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ...    27   6.5  
Z73910-5|CAI79219.1|  124|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>AF078781-4|AAC26918.1|  255|Caenorhabditis elegans Hypothetical
           protein B0545.4 protein.
          Length = 255

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 172 NPKLSIHVNELFKLVNMLFCYNIK*IEN 89
           NP + + +  + K +N LFCY +   EN
Sbjct: 224 NPDMEVKLPSMIKSINSLFCYKLSFFEN 251


>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
            isoform b protein.
          Length = 2692

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 172  NPKLSIHVNELFKLVNMLFCYNIK*IENNVTLFGFSVLLLYK 47
            +P+    V +LF LVN L   N +    N+T+  +S++ L K
Sbjct: 2362 DPRQDERVMQLFGLVNTLLANNSETCRRNLTIQRYSIVALSK 2403


>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein 363,
            isoform a protein.
          Length = 2695

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 172  NPKLSIHVNELFKLVNMLFCYNIK*IENNVTLFGFSVLLLYK 47
            +P+    V +LF LVN L   N +    N+T+  +S++ L K
Sbjct: 2365 DPRQDERVMQLFGLVNTLLANNSETCRRNLTIQRYSIVALSK 2406


>Z73910-5|CAI79219.1|  124|Caenorhabditis elegans Hypothetical
           protein M117.6 protein.
          Length = 124

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = -2

Query: 255 LKKVDILFFF*NIYSRFLFFLSFQTFKEIQN*VFM 151
           L+++ +LFFF N+    +FFL+  TF  I N VFM
Sbjct: 21  LEQLFLLFFFPNLMEFSVFFLAKSTFILIFN-VFM 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,360,648
Number of Sequences: 27780
Number of extensions: 187142
Number of successful extensions: 355
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)