Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_O20
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 129 3e-31
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 52 6e-08
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 32 0.087
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 29 0.46
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.61
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 27 3.3
SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces... 27 3.3
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 26 5.7
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 25 7.6
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 25 7.6
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 7.6
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 10.0
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 25 10.0
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 129 bits (312), Expect = 3e-31
Identities = 64/135 (47%), Positives = 93/135 (68%), Gaps = 3/135 (2%)
Frame = -3
Query: 673 DALXATRAAVEEGIVPGGGSALLRCIPVLEQLKTVNSDQATGVEIVKKALRMPCMTIAKN 494
DAL A +AAV EG++PG G++ ++ L + T N DQ GVEIV+KA+ P TI +N
Sbjct: 430 DALNAVKAAVSEGVLPGAGTSFVKASLRLGDIPTNNFDQKLGVEIVRKAITRPAQTILEN 489
Query: 493 AGIDGSVVVAKVEDL-GDEF--GYDALNNEYVNMIEKGIIDPTKVVRTALTDASGVASLL 323
AG++G+++V K+++L G EF GYD + +V++ E G++DP KVVRT L DASGVASL+
Sbjct: 490 AGLEGNLIVGKLKELYGKEFNIGYDIAKDRFVDLNEIGVLDPLKVVRTGLVDASGVASLM 549
Query: 322 TTAEAVICEIPQEKE 278
T E I + P+E +
Sbjct: 550 GTTECAIVDAPEESK 564
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 52.4 bits (120), Expect = 6e-08
Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 6/138 (4%)
Frame = -3
Query: 673 DALXATRAAVEEGIVP-GGGSALLRCIPVLEQLKTVN-SDQATGVEIVKKALRMPCMTIA 500
DAL V E V GGG A + +E+ T +A V KAL +A
Sbjct: 388 DALAVLSQTVAESRVTLGGGCAEMLMAKAVEEAATHEPGKKAVAVSAFAKALSQLPTILA 447
Query: 499 KNAGIDGSVVVAKVE----DLGDEFGYDALNNEYVNMIEKGIIDPTKVVRTALTDASGVA 332
NAG D S +VA+++ D D G D E +M KGI++ K+ + ++ S A
Sbjct: 448 DNAGFDSSELVAQLKAAHYDGNDTMGLDMDEGEIADMRAKGILEALKLKQAVVSSGSEGA 507
Query: 331 SLLTTAEAVICEIPQEKE 278
LL + ++ P+ +E
Sbjct: 508 QLLLRVDTILKAAPRPRE 525
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 31.9 bits (69), Expect = 0.087
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Frame = +3
Query: 306 TASAVVS--SDATPLASVRAVRTTFVGSMMPFSIMF-TYSLLRASYPNSSPRSSTLATTT 476
T+S++ S S +TPL S + S S + T SLL +S P+S+P SS +TT
Sbjct: 241 TSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTA 300
Query: 477 EPSMPAFFAIVMHGILRAFFTISTPVA*SLLTVLSCSNTGIHLKSAEPPPGTIPSSTA 650
+ V T +T + + L+ +S +N+ ++ P ++ S+TA
Sbjct: 301 TSASSTPLTSVNS-------TTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTA 351
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 29.5 bits (63), Expect = 0.46
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +3
Query: 318 VVSSDATPLASVRAVRTTFVGSMMPFSIMFTYSLLRASYPNSSPRSSTLATTTEPSMPAF 497
++SS LA V + +TF+ ++P S+ + +S AS NSSP ++ + +
Sbjct: 343 LLSSLEMVLAFVGSTGSTFISFILPGSLYYFFSHKVASPGNSSPLQLRISRAFAAGLAIY 402
Query: 498 FAIVM 512
+VM
Sbjct: 403 GTVVM 407
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.1 bits (62), Expect = 0.61
Identities = 29/127 (22%), Positives = 58/127 (45%)
Frame = +3
Query: 279 SFSCGISQITASAVVSSDATPLASVRAVRTTFVGSMMPFSIMFTYSLLRASYPNSSPRSS 458
+ S GIS + + SS ++ L+S + ++ S+ S T+S S P+S S
Sbjct: 559 TISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSI 618
Query: 459 TLATTTEPSMPAFFAIVMHGILRAFFTISTPVA*SLLTVLSCSNTGIHLKSAEPPPGTIP 638
+ ++T S + +M S+ ++ S+ T+ S+ + S P T+
Sbjct: 619 SSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSSLSTYSSSVIPSSSTLV 678
Query: 639 SSTAALV 659
SS+++L+
Sbjct: 679 SSSSSLI 685
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 298 HRSQLQQL*AVMQHHWHRSGLSAPPLWGQ 384
H + L Q+ AV +HH G+S P +GQ
Sbjct: 579 HDTPLSQIQAVTRHHSEYYGMSDPRKYGQ 607
>SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 26.6 bits (56), Expect = 3.3
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +3
Query: 417 LLRASYPNSSPRSSTLATTTEPSMPAFFAIVMHGI-LRAFFTISTP 551
+ +A Y S RS LA FA+V HG+ +R F I P
Sbjct: 134 IYKADYKTSIQRSRVLAEFFAKVPEKVFAVVTHGVDIRLFQKIQKP 179
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 605 QECRTTSRYNTFLNCSSSG 661
Q+C SR+NT LN SS G
Sbjct: 800 QQCIDLSRHNTLLNLSSYG 818
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 25.4 bits (53), Expect = 7.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 29 KLSSLNHSHKPACLLCSNIHSTKSFHSLHLQFN 127
+L +LN SH + S I S L+LQFN
Sbjct: 549 QLETLNFSHNLLSQISSKIGSLVKLKHLYLQFN 581
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Frame = -2
Query: 617 FCTLE-MYS---SIRTTQNSQQ*SGHWCRDCKESSE 522
FC MY SI T +S+ +G WCR C+E E
Sbjct: 165 FCNFHSMYQIKLSIHATYDSE--NGFWCRVCRECYE 198
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/37 (27%), Positives = 17/37 (45%)
Frame = +3
Query: 24 QANSHHSIILTSQPAFSAQTSTQQNPFIHCICNSIQP 134
Q N +H ++ + S T + ++H IC S P
Sbjct: 901 QNNDNHCVLCLQSASHSLMKKTVEGNWVHLICASWTP 937
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 5 TLFALTAGKLSSLNHSHKPACLLCSNIHSTKSFHSLHLQF 124
TLFA A +L++L S K C+N+ + H+ +
Sbjct: 856 TLFATHAHQLTNLTKSFKNVECYCTNLSIDRDDHTFSFDY 895
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 25.0 bits (52), Expect = 10.0
Identities = 20/82 (24%), Positives = 34/82 (41%)
Frame = +3
Query: 273 LGSFSCGISQITASAVVSSDATPLASVRAVRTTFVGSMMPFSIMFTYSLLRASYPNSSPR 452
L FS GI QI+ + + + S R F G+ P F+Y L + +
Sbjct: 168 LSFFSTGI-QISVQGI---NVNCIVSSEDGRIFFSGNKDPNLYEFSYQLEEGWFSRRCSK 223
Query: 453 SSTLATTTEPSMPAFFAIVMHG 518
+ + + +P+FF+ HG
Sbjct: 224 INITGSVFDNFIPSFFSFGTHG 245
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,556,078
Number of Sequences: 5004
Number of extensions: 49864
Number of successful extensions: 170
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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