Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_O19
         (487 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (spli...   151   2e-37
Z97191-1|CAE17890.1|   70|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AL110490-5|CAB54441.1|  424|Caenorhabditis elegans Hypothetical ...    28   4.1  
U40952-3|AAA81738.2|  205|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AC024835-2|AAK68537.1|  684|Caenorhabditis elegans Hypothetical ...    27   7.2  

>L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (splicing
            factor) relatedprotein 8 protein.
          Length = 2329

 Score =  151 bits (367), Expect = 2e-37
 Identities = 67/98 (68%), Positives = 77/98 (78%)
 Frame = -2

Query: 471  ADTDRGNNPKGYLPSHYERVQMLLSDRFLGYFMVPSQGSWNYNFMGVRHDPNMKYGVQLG 292
            A+TD+GNNPKGY+P+HYE+VQMLLSDRFLGYFMVPS G WNYNF G R  P MK+ V L 
Sbjct: 2233 ANTDKGNNPKGYMPTHYEKVQMLLSDRFLGYFMVPSNGVWNYNFQGQRWSPAMKFDVCLS 2292

Query: 291  NPREFYHEVHRPAHFMNFAAMEDAAAPTIAADREDLFA 178
            NP+E+YHE HRP HF NF A +D    T +ADRED FA
Sbjct: 2293 NPKEYYHEDHRPVHFHNFKAFDDPLG-TGSADREDAFA 2329


>Z97191-1|CAE17890.1|   70|Caenorhabditis elegans Hypothetical
           protein H32K16.2 protein.
          Length = 70

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 414 VQMLLSDRFLGYFMVPSQGSWNYNFMGVRHD 322
           V ML+S  +   F   SQ SW YN  GV +D
Sbjct: 13  VLMLISTSYCQLFGGWSQPSWGYNSQGVGYD 43


>AL110490-5|CAB54441.1|  424|Caenorhabditis elegans Hypothetical
           protein Y48B6A.5 protein.
          Length = 424

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +1

Query: 268 LVVELARVAELHTVFHIRVVTDAHKVIIPT 357
           L +++  +++LH +F ++   D H +  PT
Sbjct: 323 LTIQVTNISQLHVMFALKTNADTHLIAAPT 352


>U40952-3|AAA81738.2|  205|Caenorhabditis elegans Hypothetical
           protein C03B1.9 protein.
          Length = 205

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -2

Query: 345 NFMGVRHDPNMKYGVQLGNPREFYHEVHRPAHFMNFAAMEDAAAPTIAAD 196
           +F+  ++D  M+   ++G   E YH+ +  ++F+N  A+E      IA D
Sbjct: 109 HFINKQNDNYMEARAEIGLLIELYHKDYLKSNFLNNDALEKLIILIIATD 158


>AC024835-2|AAK68537.1|  684|Caenorhabditis elegans Hypothetical
           protein Y57E12B.3 protein.
          Length = 684

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -1

Query: 355 LEL*LYGRPSRPEYEIR 305
           L L +YG PS PEY+IR
Sbjct: 559 LNLKIYGAPSPPEYDIR 575


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,922,940
Number of Sequences: 27780
Number of extensions: 188814
Number of successful extensions: 429
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)