Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_O16
(645 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 28 1.0
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 27 1.8
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 27 2.3
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 26 5.3
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 25 7.1
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 25 7.1
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 9.3
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa... 25 9.3
SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pomb... 25 9.3
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 25 9.3
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 487 KAAPRFKGGFSNDYILRLNLICSLQSGCTRTRRWINC 597
+A+ RF+ ++D + LN IC L+ C R I+C
Sbjct: 828 EASSRFRFNLTDDLLHSLNPICILRGTCLRLGIQISC 864
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 499 RFKGGFSNDYILRLNLICSLQSGCTRTRRWINCILTF-NVLN*SIPXMD 642
R + GF D + LN+I +++ G + R + ++TF N L P +D
Sbjct: 28 RTQEGFETDILRALNIILTVKKGNSNADRVLRFLVTFVNYLQQKDPEID 76
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -1
Query: 534 QNVIVREPAFKTRRRLSCLCMKLINAAPGIADDHERLAEGNEKDYSAHEEDV 379
QN + R ++TR + + L L+N+ G H E E+D S E+V
Sbjct: 357 QNQLYRTILYETRNKKT-LVQNLLNSLEGKLQAHLEKFEQTERDISEKNEEV 407
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 361 SLPLVILPQDTNNSSTHCRVVRLS 290
++PLV+ D N+ ST ++VRLS
Sbjct: 551 NIPLVVCDLDKNSVSTFGKIVRLS 574
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 444 ADDHERLAEGNEKDYSAHEEDVALNS 367
AD+ E E E+D A +EDV L +
Sbjct: 237 ADEEEEAVEAMEEDEVAEDEDVVLET 262
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 322 NYSCPAGE*LKVGTHRVQC 378
NY+ P G +KVG+ R +C
Sbjct: 239 NYTLPDGRVIKVGSERYEC 257
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +3
Query: 156 GGRAATSPPRGPQHFAYNYFNLYNSL 233
G R RG HF YN LYN +
Sbjct: 1332 GKRCCNKSCRGSVHFEYNDEQLYNQI 1357
>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
Nse6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 9.3
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -1
Query: 522 VREPAFKTRRRLSCLCMKL--INAAPGIADDHERLAEGNEKD 403
V E FKT RL CL KL I+ + DH L+ KD
Sbjct: 408 VDEKHFKTNERLECLLEKLRKIDLTISGSTDHLLLSRCEVKD 449
>SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 25.0 bits (52), Expect = 9.3
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 498 RRRLSCLCMKLINAAPGIADDHERLAEGNEKDYSAHEEDVA 376
+RRL + ++ P IADD E A E++ EEDV+
Sbjct: 119 KRRLEKIRLQRYGHVPTIADDLEMQASAAEEEEEG-EEDVS 158
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 25.0 bits (52), Expect = 9.3
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -1
Query: 543 IEPQNVIVREPAFKTRRRLSCLCMKLINAAPGIADDHERLAEGNEKDYSA 394
I+ ++I E R + LC++L GI DH RL N YSA
Sbjct: 817 IDQDSIIEFEMLLDRRIKYDDLCIEL-GQKLGIGADHIRLTTCNPLTYSA 865
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,210,107
Number of Sequences: 5004
Number of extensions: 37090
Number of successful extensions: 65
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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