Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_O16
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0492 + 6476586-6476873,6477414-6477686,6477769-6477948,647...    30   1.4  
01_01_0188 - 1631006-1631017,1631171-1631307,1631934-1632033           29   4.2  
09_04_0413 + 17372852-17373787                                         28   7.3  
08_02_1255 + 25636634-25636956,25637462-25637894                       28   7.3  
06_01_0622 - 4527710-4528266,4528302-4528303,4535590-4535777           28   7.3  
04_04_0183 - 23384290-23384783,23385064-23385139,23385291-23385296     27   9.7  

>04_01_0492 +
           6476586-6476873,6477414-6477686,6477769-6477948,
           6478436-6478696,6479171-6479303,6479404-6479494,
           6479921-6480023,6480557-6480660,6480809-6480902,
           6480985-6481140,6481224-6481286,6481388-6481453,
           6481670-6481870,6481999-6482076,6482165-6482284,
           6482382-6482462,6482548-6482633,6482920-6483031,
           6483093-6483170,6483306-6483482
          Length = 914

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -2

Query: 113 MSLTRYRGGPPPHSRGVGG 57
           MS    RG PPPH  GVGG
Sbjct: 1   MSTAARRGHPPPHENGVGG 19


>01_01_0188 - 1631006-1631017,1631171-1631307,1631934-1632033
          Length = 82

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 301 LHDNEWMNYSCPAGE*LKVGTHRVQCYVLLVC 396
           LHD     + CPA   LK+  H +  ++LL+C
Sbjct: 28  LHDRSRGIWPCPASAILKIYFHALGLFLLLIC 59


>09_04_0413 + 17372852-17373787
          Length = 311

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 552 LASVRLYTDSAMDKLHFNIQCPELIDSXNG 641
           L S+R+Y    MD+LH  +  P  +D+  G
Sbjct: 13  LDSLRIYRSGKMDRLHHPVLAPAGVDAATG 42


>08_02_1255 + 25636634-25636956,25637462-25637894
          Length = 251

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -1

Query: 537 PQNVIVREPAFKTRRRLSCLCMKLINAAPGIADDHERLAEGNEKDYSAHEE 385
           P N   R  A  +RRR SC  +      P +A DH  + E +E+D S  E+
Sbjct: 143 PFNKRRRVLAAWSRRRASCSSLATTYLPPLLAPDHAVVEEEDEEDDSDAEQ 193


>06_01_0622 - 4527710-4528266,4528302-4528303,4535590-4535777
          Length = 248

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = -2

Query: 125 LNQTMSLTRYRGGPPPHSRGVGGGDPLVYRLHR 27
           L    S  R  GG PPH R    G P   RL R
Sbjct: 140 LTAIFSSARRAGGSPPHGRRYNAGAPTGRRLDR 172


>04_04_0183 - 23384290-23384783,23385064-23385139,23385291-23385296
          Length = 191

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -2

Query: 92  GGPPPHSRGVGGG 54
           G PPPH RG GGG
Sbjct: 106 GYPPPHQRGGGGG 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,163,109
Number of Sequences: 37544
Number of extensions: 299283
Number of successful extensions: 904
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)