Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_O14
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    30   0.30 
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    27   2.1  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   6.5  

>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
 Frame = -3

Query: 338 LCTVYIVFSSYSTNYCEIN*LWRKDYMGKR---HMEILFV--NLLKVDSYAQHWISICDK 174
           LC  Y+  S Y+  +C +N    KDY+      H   LF+    L +DS       +C +
Sbjct: 414 LCKHYVYASLYACLFCNLNEGSPKDYLDNDIYVHARCLFLLTKTLNLDSLKS---ILCSR 470

Query: 173 MILIYQNRPSFYIVLMILK 117
           + L Y    ++Y   ++LK
Sbjct: 471 VRLYYNIEIAYYFTDVLLK 489


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 328 TVQSTTNSKKGVFNRNKTFLAFRL*TN 408
           T+ S     KG+FN  K F+ F+L T+
Sbjct: 667 TILSAVEEGKGIFNNIKNFITFQLSTS 693


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1375

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 369  IENTLFTVCGALYCLYCI 316
            I+    T CG LYC +C+
Sbjct: 1099 IKQGFITTCGHLYCSFCL 1116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,522,097
Number of Sequences: 5004
Number of extensions: 52158
Number of successful extensions: 123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)