Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_O14
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0211 - 1675189-1675439,1675520-1675784,1675903-1675982,167...    29   3.8  
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328...    27   8.8  

>08_01_0211 -
           1675189-1675439,1675520-1675784,1675903-1675982,
           1676992-1677799
          Length = 467

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +3

Query: 174 FITNRYPMLCV*I---HFQQVNKQNFHVSFTHVIFSPKSI 284
           FITNR   L   +     +Q+NK  +++SF  +IF P SI
Sbjct: 342 FITNRVTTLQASLDSWQSEQINKSLYYLSFLSIIFLPLSI 381


>05_03_0604 -
           16132173-16132391,16132488-16132556,16132824-16132898,
           16132981-16133113,16133188-16133297,16133360-16133407,
           16133657-16133983,16135006-16135233,16135360-16135689,
           16135780-16136586
          Length = 781

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 257 GKRHMEILFVNLLKVDSYAQHWISICDKMILIYQNR 150
           GK  +++  + L    S+  +WISI D +I I Q R
Sbjct: 84  GKTVVDVAGIGLCCSSSFQSYWISIYDGLISIGQGR 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,473,038
Number of Sequences: 37544
Number of extensions: 262756
Number of successful extensions: 507
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)