Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_O14
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41013-4|AAA82303.2|  329|Caenorhabditis elegans Serpentine rece...    31   0.85 
AF016655-3|AAU05587.1|  322|Caenorhabditis elegans Serpentine re...    29   2.6  
Z81551-2|CAB04482.4|  413|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z75549-2|CAA99916.1|  313|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AC024842-4|AAY43991.1|  703|Caenorhabditis elegans Hypothetical ...    27   7.9  
AC024842-3|AAP13732.1| 1111|Caenorhabditis elegans Hypothetical ...    27   7.9  
AC024842-2|ABA00150.1|  604|Caenorhabditis elegans Hypothetical ...    27   7.9  
AC024842-1|AAF59622.4| 1127|Caenorhabditis elegans Hypothetical ...    27   7.9  

>U41013-4|AAA82303.2|  329|Caenorhabditis elegans Serpentine
           receptor, class t protein73 protein.
          Length = 329

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 364 FNRNKTFLAFRL*TNFNIYNLNYCLVFFLNTFRF 465
           F  NK F +F +   F I  + +C+V FLN F F
Sbjct: 141 FQSNKIFNSFNMKIYFTIVLIVWCIVCFLNAFGF 174


>AF016655-3|AAU05587.1|  322|Caenorhabditis elegans Serpentine
           receptor, class z protein67 protein.
          Length = 322

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 382 TFYSD*KHPFYCLW-CFVLSILYLVRIVL 299
           TF+ D  HP+Y +W  F ++I Y + I+L
Sbjct: 167 TFFDD-SHPYYLIWSVFFITIFYTMHILL 194


>Z81551-2|CAB04482.4|  413|Caenorhabditis elegans Hypothetical
           protein F56A12.2 protein.
          Length = 413

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 18/56 (32%), Positives = 31/56 (55%)
 Frame = -3

Query: 371 RLKTPFLLFVVLCTVYIVFSSYSTNYCEIN*LWRKDYMGKRHMEILFVNLLKVDSY 204
           R   PFL+ ++L  V + F  +ST+Y E N +   D + +   ++L +  L+ DSY
Sbjct: 200 RFFRPFLVPILL--VILCFVIHSTSYFEFNLITCFDEVHQTESKMLQMTQLRGDSY 253


>Z75549-2|CAA99916.1|  313|Caenorhabditis elegans Hypothetical
           protein T19C4.2 protein.
          Length = 313

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 22/81 (27%), Positives = 38/81 (46%)
 Frame = -3

Query: 383 NVLFRLKTPFLLFVVLCTVYIVFSSYSTNYCEIN*LWRKDYMGKRHMEILFVNLLKVDSY 204
           N+LF   TP + F  +CT+  +  +  +  C I  +W+     K +ME  F+ L+ V S 
Sbjct: 168 NLLF---TPLIYFQGVCTLCSLICNIKS--CSI--VWKASIEMKANMEANFLILITVTSA 220

Query: 203 AQHWISICDKMILIYQNRPSF 141
            Q   +    ++  Y N P +
Sbjct: 221 VQTLGAFITFVLNEYPNSPMY 241


>AC024842-4|AAY43991.1|  703|Caenorhabditis elegans Hypothetical
           protein Y59H11AR.2c protein.
          Length = 703

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +1

Query: 487 IKYVSICHYIILFSVFAS 540
           I YVS+ HYI+L+ VFA+
Sbjct: 597 IFYVSLFHYIVLYFVFAA 614


>AC024842-3|AAP13732.1| 1111|Caenorhabditis elegans Hypothetical
            protein Y59H11AR.2b protein.
          Length = 1111

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +1

Query: 487  IKYVSICHYIILFSVFAS 540
            I YVS+ HYI+L+ VFA+
Sbjct: 1005 IFYVSLFHYIVLYFVFAA 1022


>AC024842-2|ABA00150.1|  604|Caenorhabditis elegans Hypothetical
           protein Y59H11AR.2d protein.
          Length = 604

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +1

Query: 487 IKYVSICHYIILFSVFAS 540
           I YVS+ HYI+L+ VFA+
Sbjct: 498 IFYVSLFHYIVLYFVFAA 515


>AC024842-1|AAF59622.4| 1127|Caenorhabditis elegans Hypothetical
            protein Y59H11AR.2a protein.
          Length = 1127

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +1

Query: 487  IKYVSICHYIILFSVFAS 540
            I YVS+ HYI+L+ VFA+
Sbjct: 1021 IFYVSLFHYIVLYFVFAA 1038


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,759,656
Number of Sequences: 27780
Number of extensions: 283944
Number of successful extensions: 659
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)