Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_O14
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   4.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   4.1  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   5.4  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   5.4  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   9.4  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +1

Query: 358 GVFNRNKTFLAFRL*TNFNIYNLNYCLVFFLNTFRFVNQ*TKNIK-YVSICHYIILFSVF 534
           GVF+ NK+   F    N   +NLNY           +   +  IK  +S+C  +I   V+
Sbjct: 38  GVFSNNKSKKYFEQTLNELNFNLNYVNKGVTYKHTIIEMDSNPIKTALSVCKSLIERQVY 97

Query: 535 A 537
           A
Sbjct: 98  A 98


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 337 FVLSILYLVRIVLITVKSIDFGE 269
           F+LS   + RI+ IT K I + +
Sbjct: 312 FILSAFDMARIIQITPKRIQYAQ 334


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 337 FVLSILYLVRIVLITVKSIDFGE 269
           F+LS   + RI+ IT K I + +
Sbjct: 350 FILSAFDMARIIQITPKRIQYAQ 372


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -3

Query: 368 LKTPFLLFVVLCTVYIVFSSYSTNYCEIN 282
           +K   LLFV++    ++   Y+T Y +++
Sbjct: 1   MKIYILLFVLVTITCVIAEDYTTKYDDMD 29


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -3

Query: 368 LKTPFLLFVVLCTVYIVFSSYSTNYCEIN 282
           +K   LLFV++    ++   Y+T Y +++
Sbjct: 1   MKIYILLFVLVTITCVIAEDYTTKYDDMD 29


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +1

Query: 328 TVQSTTNSKKGVFNRNKTFLAFRL*TNFNIYNLNY 432
           T +  +   K + N N     +    N+N YN NY
Sbjct: 71  TERERSKEPKIISNNNSLSNNYNYNNNYNNYNNNY 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,188
Number of Sequences: 438
Number of extensions: 3851
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)