Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_O10
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr...    28   0.82 
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.5  

>SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +2

Query: 188 GYNIIYKK*LIQLNTYVLWSPEFTCKFNVSFWHKFKNRNLIHKTFYMYTTNYK 346
           GY ++    L+Q N  ++   E T K ++ +W +F +     K  + Y  +YK
Sbjct: 18  GYGVLR---LLQYNEQLMSGWESTMKDDIGYWRRFVHDFYTEKGTFRYNIDYK 67


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 118 CLCVFIIRFYGLSIYFYLS 174
           CL +F++ F G S YF L+
Sbjct: 280 CLVIFVVAFSGFSAYFLLN 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,946,713
Number of Sequences: 5004
Number of extensions: 38139
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)