Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_O10
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56965-8|AAB52663.1|  314|Caenorhabditis elegans Hypothetical pr...    36   0.026
Z73098-11|CAA97338.1|  225|Caenorhabditis elegans Hypothetical p...    28   4.0  
U23528-8|AAK31386.2|  293|Caenorhabditis elegans Hypothetical pr...    28   4.0  
U21323-12|AAA62554.2|  354|Caenorhabditis elegans Hypothetical p...    28   5.3  
Z54216-2|CAA90945.1|  242|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U64846-7|AAG24116.2|  327|Caenorhabditis elegans Serpentine rece...    27   9.2  
U64846-3|AAG24114.1|  327|Caenorhabditis elegans Serpentine rece...    27   9.2  

>U56965-8|AAB52663.1|  314|Caenorhabditis elegans Hypothetical
           protein C15H9.3 protein.
          Length = 314

 Score = 35.5 bits (78), Expect = 0.026
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 215 LIQLNTYVLWSPEFTCKFNVSFWHKFKNRNLIHKTFYMYTTNYKILNVIY 364
           L  L+   LWSPEF   F+  FW   + RN     F+ Y  NY +  +++
Sbjct: 133 LSMLSVCYLWSPEFPIIFHPEFWGWTEERNKPLVNFFFY-LNYVVQGIVF 181


>Z73098-11|CAA97338.1|  225|Caenorhabditis elegans Hypothetical
           protein T21C9.11 protein.
          Length = 225

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 129 IYNTILWTIYIFLSIYLVNKVIILFI 206
           IY  I   +YIFL++   N  +ILF+
Sbjct: 124 IYRRIFMPLYIFLAVMATNGTLILFV 149


>U23528-8|AAK31386.2|  293|Caenorhabditis elegans Hypothetical
           protein B0034.5 protein.
          Length = 293

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 218 IQLNTYVLWSPEFTCKFNVSFWHKFKNRNLIHKTF 322
           ++L  Y+L +PE       SF HK +++  +H+TF
Sbjct: 251 LRLPIYMLCNPELRRAVKKSFTHKSEHQQKMHQTF 285


>U21323-12|AAA62554.2|  354|Caenorhabditis elegans Hypothetical
           protein C45G9.11 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/58 (22%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -2

Query: 466 LDFLRVTKYIHRFILVYTYYINNYK*HLKFYSLIINDI*NFI-VSSIHIKCFMYQISI 296
           ++F +   +IH    +++++IN +      +SL+      F  ++ + I CF+YQ+ +
Sbjct: 270 VNFDKAVLHIHYIFCIFSFFINFFFLIFSIWSLVSPGSLTFTPINCLLIFCFLYQLPL 327


>Z54216-2|CAA90945.1|  242|Caenorhabditis elegans Hypothetical
           protein T24H10.3 protein.
          Length = 242

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 281 WHKFKNRNLIHKTFYMYTTNYKILNVIY 364
           WH  K+ NL+ +    YTT +++LN  Y
Sbjct: 41  WHPDKS-NLVEEDMQTYTTKFQLLNKAY 67


>U64846-7|AAG24116.2|  327|Caenorhabditis elegans Serpentine
           receptor, class t protein37 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 117 MLVCIYNTILWTIYIFLSIYLVNKVIIL 200
           +L+CI   I   IY+F++++ V+  +IL
Sbjct: 247 VLICIATQIASIIYVFMNLFKVSTCVIL 274


>U64846-3|AAG24114.1|  327|Caenorhabditis elegans Serpentine
           receptor, class t protein36 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 117 MLVCIYNTILWTIYIFLSIYLVNKVIIL 200
           +L+CI   I   IY+F++++ V+  +IL
Sbjct: 247 VLICIATQIASIIYVFMNLFKVSTCVIL 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,468,878
Number of Sequences: 27780
Number of extensions: 205111
Number of successful extensions: 424
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)