Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_O09
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    27   1.6  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    26   4.8  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   8.5  

>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +2

Query: 332 PSS*YRPWLSSVCNHLPA*TLQTPQNLN 415
           PS   RP LSSV  +LP  +  TP NLN
Sbjct: 275 PSPYSRPLLSSVHPNLPPGSQSTPANLN 302


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
           Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -1

Query: 311 YLPLSRTNLNKRKKSVNSKQ 252
           +L L+R+ L+K  +S+NSKQ
Sbjct: 715 FLELTRSQLSKMNESINSKQ 734


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 8   LQIICYFVNYS*LFISKLAYLSTKDYRQK 94
           L  + YFVN S  F +  A  STK Y+ K
Sbjct: 183 LSELSYFVNSSMSFANTSAPFSTKGYKMK 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,647,900
Number of Sequences: 5004
Number of extensions: 23972
Number of successful extensions: 43
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)