Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_O08
         (754 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1091 + 24256025-24256190,24256806-24257978,24258066-242587...    32   0.56 
01_05_0037 - 17452503-17452523,17452594-17452689,17453315-174534...    30   1.7  
10_07_0051 - 12373146-12373517,12375836-12376105,12377560-12377799     29   3.0  
05_06_0040 + 25116732-25118030                                         29   4.0  
08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029...    28   6.9  
04_03_0803 - 19835284-19836050,19836337-19836418                       28   6.9  
05_07_0105 - 27716126-27716218,27716548-27716658,27716764-277168...    28   9.2  

>08_02_1091 +
           24256025-24256190,24256806-24257978,24258066-24258733,
           24258994-24260065,24260241-24260563,24260647-24260835,
           24261400-24261506,24262103-24262163,24262617-24262634
          Length = 1258

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = -2

Query: 351 SFPTARTHVRRVLAIHSSLVLSSKPKPCEEGCTCKPDYLKLDDNSACVKICECPQMASSP 172
           SFP  R      +  H S     +  PC+ G + +PDYL    N+    ICE P+M S+P
Sbjct: 308 SFPDKRVDENLKILEHQSSECHVRSPPCD-GSSLRPDYLA---NA----ICEAPKMLSTP 359


>01_05_0037 -
           17452503-17452523,17452594-17452689,17453315-17453419,
           17453699-17453869,17454309-17454378,17454698-17454879,
           17457297-17457406,17458353-17458457,17458537-17458615,
           17458722-17458762,17459019-17459097,17460620-17460814
          Length = 417

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +1

Query: 376 NLGSFLGRHIYRYRLSDIPLYTGIRLCSTLASPMG--RA*VSPSLSTSLGRNVLGHI 540
           NLG   GRH+    + + P Y  ++ C  L + +G   A +   L T+L  N+L HI
Sbjct: 126 NLGIITGRHLAELCMGEYPKY--VKYCLWLLAELGVIAATIPGVLGTALAYNMLLHI 180


>10_07_0051 - 12373146-12373517,12375836-12376105,12377560-12377799
          Length = 293

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 646 RLCRTFPPPMGRS*DRPSLSTSLGCTVLGHSSHIXH 753
           R C++ P   GR+ + P+LS+S   TV G  SH  H
Sbjct: 228 RRCQSSPIRGGRAQEMPTLSSSTPSTVGGLGSHCRH 263


>05_06_0040 + 25116732-25118030
          Length = 432

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 21/82 (25%), Positives = 31/82 (37%)
 Frame = -1

Query: 565 CSENEIYVKCVQAHCGPRTCSEKDLPMPCPLVRQEYCKAGCLCKEGYLKDDSGKCVAREN 386
           C  N  Y +C++  CG    + K +P   P       K   LC   +  D      + + 
Sbjct: 53  CGTNSSY-QCLE--CGNEHSTSKPIPSFSPSQSSSNMKE--LCGSRFCVDIHSSDNSHDP 107

Query: 385 CPN*ECSGENEEFSNCTNPCPP 320
           C    C+  +     CT PCPP
Sbjct: 108 CAAVGCAIPSFMSDLCTRPCPP 129


>08_02_1453 - 27199228-27200579,27200712-27202646,27202905-27202966,
            27203525-27203545,27204305-27204344,27204345-27204792,
            27204866-27204964,27205071-27205394,27205446-27205574,
            27205657-27205875,27205976-27206194,27206436-27206669,
            27206773-27206943,27207466-27207577,27207955-27208010,
            27208083-27208181,27208901-27209134,27209258-27209311,
            27209363-27209422
          Length = 1955

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 210  VKICECPQMASSPDCPKL 157
            ++I +CP++A  PDCP L
Sbjct: 1701 LRISDCPKLAGIPDCPVL 1718


>04_03_0803 - 19835284-19836050,19836337-19836418
          Length = 282

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
 Frame = -1

Query: 532 QAHCGPRTCSEKDLPMPCPLVRQEYCKAGCLCKEGYLKDDSGKCVARENCPN*ECSG--E 359
           Q HC P+    +     C    +++C  G  CK         +C     C + +C G   
Sbjct: 164 QCHCCPKPPPPETKTKACEYCSRDHCHGG--CKITPPPPPPSRC---GGCDHADCGGWCG 218

Query: 358 NEEFSNCTNPCPPRTC 311
            +   NC  P PP  C
Sbjct: 219 GQPPINCPPPPPPSRC 234


>05_07_0105 -
           27716126-27716218,27716548-27716658,27716764-27716815,
           27716895-27717034,27717298-27717422,27717514-27717638,
           27717853-27717898,27718374-27718947
          Length = 421

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +3

Query: 390 SRATHLPLSSFRYPSLHRHPALQYSCLTNGQGIGKSFSEHVLGPQCAWTH 539
           S ++   L SF+  S+  + + +Y  + +GQ +GKS+   + GP C  +H
Sbjct: 164 SSSSSSDLLSFQLDSIIGNCSFRY--VRHGQNMGKSYVSLLFGPCCPLSH 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,705,176
Number of Sequences: 37544
Number of extensions: 463945
Number of successful extensions: 1199
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)