Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_O08
         (754 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    40   3e-05
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    40   3e-05
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.76 
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    24   1.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   4.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   4.1  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 39.5 bits (88), Expect = 3e-05
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = -1

Query: 565 CSENEIYVKCVQAHCGPRTCSEKDLPMPCPLVRQEYCKAGCLCKEGYLKDDSGKCVAREN 386
           C  NEI+ +C    C  R C      +P PL  +  C  GC+C+ GYL++    CV R  
Sbjct: 37  CPSNEIFSRC-DGRC-QRFCPNV---VPKPLCIK-ICAPGCVCRLGYLRNKKKVCVPRSK 90

Query: 385 C 383
           C
Sbjct: 91  C 91



 Score = 35.5 bits (78), Expect = 5e-04
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 661 KSCKAGCVCKEGYLKDDSGKCVARENC 581
           K C  GCVC+ GYL++    CV R  C
Sbjct: 65  KICAPGCVCRLGYLRNKKKVCVPRSKC 91



 Score = 24.6 bits (51), Expect = 1.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 276 KPCEEGCTCKPDYLKLDDNSACVKICEC 193
           K C  GC C+  YL+ +    CV   +C
Sbjct: 65  KICAPGCVCRLGYLR-NKKKVCVPRSKC 91


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 39.5 bits (88), Expect = 3e-05
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = -1

Query: 565 CSENEIYVKCVQAHCGPRTCSEKDLPMPCPLVRQEYCKAGCLCKEGYLKDDSGKCVAREN 386
           C  NEI+ +C    C  R C      +P PL  +  C  GC+C+ GYL++    CV R  
Sbjct: 37  CPSNEIFSRC-DGRC-QRFCPNV---VPKPLCIK-ICAPGCVCRLGYLRNKKKVCVPRSK 90

Query: 385 C 383
           C
Sbjct: 91  C 91



 Score = 35.5 bits (78), Expect = 5e-04
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 661 KSCKAGCVCKEGYLKDDSGKCVARENC 581
           K C  GCVC+ GYL++    CV R  C
Sbjct: 65  KICAPGCVCRLGYLRNKKKVCVPRSKC 91



 Score = 24.6 bits (51), Expect = 1.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 276 KPCEEGCTCKPDYLKLDDNSACVKICEC 193
           K C  GC C+  YL+ +    CV   +C
Sbjct: 65  KICAPGCVCRLGYLR-NKKKVCVPRSKC 91


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +1

Query: 463 LASPMGRA*VSPSLSTSLGRNVL-GHISRIFHFQSRGQNLGSFLGRHIYRYRLSDIPLYT 639
           LAS       + + +TS G  +L G +S+  H Q  G  + +  GRH+  +     P YT
Sbjct: 169 LASVKAEPGSTGTTTTSTGTRLLHGILSQ--HPQQHGLGVQNGYGRHLPGHAQMGRPSYT 226

Query: 640 RIRLCRTFPPPMG 678
              +  T  P  G
Sbjct: 227 TATMATTSTPGSG 239


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -1

Query: 442 LCKEGYLKDDSGKCVARENCPN*ECSGENEEFSNCTNPCPP 320
           +C EG ++    KC+         CS E  E S  +NPC P
Sbjct: 78  ICAEG-MQCSCNKCIG--------CSAEKFECSKTSNPCLP 109


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -2

Query: 261 GCTCKPDYLKLDDNSACVKICECP 190
           GC CKP Y    +   C    ECP
Sbjct: 246 GCHCKPGYQADVEKQECT---ECP 266



 Score = 21.4 bits (43), Expect = 9.4
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = -1

Query: 448 GCLCKEGYLKDDSGKCVARENCPN*EC---SGENEEFSNCTNPCPPRTCNS 305
           GC CK GY  D     V ++ C   EC     ++E  S+    CP  + +S
Sbjct: 246 GCHCKPGYQAD-----VEKQECT--ECPIGKFKHEAGSHSCEACPAHSKSS 289


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +3

Query: 369 HS*FGQFSRATHLPLSSFRYPSLHRHPALQYSCLTNGQGIGKSFSE 506
           HS      R+THL +S        R P+ + SC +   G   S  E
Sbjct: 378 HSQLCPTPRSTHLKVSGINRVGSTRRPSRRNSCESQMMGDEMSLRE 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,770
Number of Sequences: 438
Number of extensions: 4609
Number of successful extensions: 21
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)