Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_O07
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0324 - 20946774-20946935,20947301-20947780                       73   2e-13
01_06_0783 + 31975261-31975398,31975583-31975726                       69   3e-12
01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660           69   5e-12
02_04_0361 - 22359278-22359439,22362291-22362728                       68   7e-12
06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749     58   5e-09
11_06_0493 - 24310412-24311362,24311437-24311783,24311857-24311989     29   5.0  

>01_05_0324 - 20946774-20946935,20947301-20947780
          Length = 213

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 34/74 (45%), Positives = 50/74 (67%), Gaps = 3/74 (4%)
 Frame = -2

Query: 730 QQDAVDCATQA---LEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNXGSYVTHETRHFI 560
           Q  A  CA ++   L+KF+  + +A  +KKEFDK Y PTWHCIVG + GS+VTH    F+
Sbjct: 132 QLHAFRCAKRSHDSLDKFS-SRQLAHDVKKEFDKVYGPTWHCIVGTSYGSFVTHARGCFL 190

Query: 559 YFYLGQVAILLFKS 518
           YF + ++ ++LFK+
Sbjct: 191 YFSMDKIIVMLFKT 204


>01_06_0783 + 31975261-31975398,31975583-31975726
          Length = 93

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 33/72 (45%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
 Frame = -2

Query: 730 QQDAVDCATQALEKFNIE--KDIAAFIKKEFDKKYNPTWHCIVGRNXGSYVTHETRHFIY 557
           Q  A+  A +AL++F++   + IAA IKKEFD  + P W C+VG + G Y TH    FIY
Sbjct: 18  QLQAMSAAYKALDRFDVLDCRSIAAHIKKEFDMIHGPGWQCVVGASFGCYFTHSKGSFIY 77

Query: 556 FYLGQVAILLFK 521
           F LG +  L+FK
Sbjct: 78  FKLGALRFLVFK 89


>01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660
          Length = 111

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 29/44 (65%), Positives = 34/44 (77%)
 Frame = -2

Query: 730 QQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRN 599
           +Q+A D A  A EK  +EKDIA +IKKEFDK + PTWHCIVGRN
Sbjct: 59  RQEAFDIARVAFEKHTMEKDIAEYIKKEFDKNHGPTWHCIVGRN 102


>02_04_0361 - 22359278-22359439,22362291-22362728
          Length = 199

 Score = 68.1 bits (159), Expect = 7e-12
 Identities = 28/53 (52%), Positives = 36/53 (67%)
 Frame = -2

Query: 676 KDIAAFIKKEFDKKYNPTWHCIVGRNXGSYVTHETRHFIYFYLGQVAILLFKS 518
           K +A  +KKEFD  Y P WHCIVG   GSYVTH    F+YF + +V +LLF++
Sbjct: 138 KRLALALKKEFDATYGPAWHCIVGTGFGSYVTHSVGGFLYFSVDKVYVLLFRT 190


>06_03_0116 + 16816970-16817209,16817328-16817461,16818716-16818749
          Length = 135

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 26/47 (55%), Positives = 32/47 (68%)
 Frame = -2

Query: 730 QQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNXGS 590
           +Q+A D    A EK  +EKDI  +IK EFDK + PTWHCIVG N G+
Sbjct: 71  RQEAFDIDRVAFEKHTMEKDIVEYIK-EFDKNHGPTWHCIVGHNFGT 116


>11_06_0493 - 24310412-24311362,24311437-24311783,24311857-24311989
          Length = 476

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +3

Query: 567 WRVSCVTYEPXLRPTMQCQVGLYFLSNSFLMNAAMSFSMLNFSSA*VAQSTA 722
           WR   +     +R  + C VGL+F   +  ++A + +S L F  A +A +T+
Sbjct: 260 WRELLLRPSAMVRRIVTCVVGLHFFQQASGIDAIVLYSPLVFKKAGMASNTS 311


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,925,017
Number of Sequences: 37544
Number of extensions: 313929
Number of successful extensions: 607
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)