Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_O07
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00043-8|AAC77510.1|   89|Caenorhabditis elegans Dynein light ch...   153   9e-38
AC084197-38|AAU87807.1|  186|Caenorhabditis elegans Hypothetical...    79   4e-15
Z68507-5|CAA92827.2|   90|Caenorhabditis elegans Hypothetical pr...    70   2e-12
AL161711-3|CAL63993.1|  129|Caenorhabditis elegans Hypothetical ...    60   1e-09
AL161711-2|CAD31700.1|  111|Caenorhabditis elegans Hypothetical ...    60   1e-09
AL032639-6|CAA21630.1|  405|Caenorhabditis elegans Hypothetical ...    29   4.5  
AF053067-1|AAC35273.1|  405|Caenorhabditis elegans cyclin D prot...    29   4.5  
AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp ass...    28   7.8  

>U00043-8|AAC77510.1|   89|Caenorhabditis elegans Dynein light chain
           protein 1 protein.
          Length = 89

 Score =  153 bits (372), Expect = 9e-38
 Identities = 67/72 (93%), Positives = 71/72 (98%)
 Frame = -2

Query: 730 QQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNXGSYVTHETRHFIYFY 551
           QQDA+DCATQALEK+NIEKDIAA+IKKEFDKKYNPTWHCIVGRN GSYVTHET+HFIYFY
Sbjct: 18  QQDAIDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFY 77

Query: 550 LGQVAILLFKSG 515
           LGQVAILLFKSG
Sbjct: 78  LGQVAILLFKSG 89


>AC084197-38|AAU87807.1|  186|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.43 protein.
          Length = 186

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 31/71 (43%), Positives = 49/71 (69%)
 Frame = -2

Query: 730 QQDAVDCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNXGSYVTHETRHFIYFY 551
           +Q+A   A +++  +++E DIA  +K  FD++Y P WHCI G++ GS+VT E   FIYF 
Sbjct: 70  EQEACSLAAKSIMTYHLEHDIARHLKMAFDREYGPDWHCICGKHFGSFVTFEPDSFIYFR 129

Query: 550 LGQVAILLFKS 518
           +G +A +LFK+
Sbjct: 130 IGTIAFMLFKT 140


>Z68507-5|CAA92827.2|   90|Caenorhabditis elegans Hypothetical
           protein M18.2 protein.
          Length = 90

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 31/73 (42%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
 Frame = -2

Query: 730 QQDAV-DCATQALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNXGSYVTHETRHFIYF 554
           Q+D V     +A   +NI+KD+AAF+K+E DKK+  TWH I G+  GS V++E  HFI  
Sbjct: 17  QRDMVISVVREAQRLYNIDKDVAAFVKEELDKKFGATWHVICGKCFGSRVSYEMGHFILL 76

Query: 553 YLGQVAILLFKSG 515
              +V ++++K G
Sbjct: 77  KCNKVNVMIYKCG 89


>AL161711-3|CAL63993.1|  129|Caenorhabditis elegans Hypothetical
           protein Y10G11A.2b protein.
          Length = 129

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 25/60 (41%), Positives = 43/60 (71%)
 Frame = -2

Query: 700 ALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNXGSYVTHETRHFIYFYLGQVAILLFK 521
           AL+   IE +IA+F+K++FD KY   W C+VGRN GS++  +   FI+F + +++++LF+
Sbjct: 72  ALQLCGIENEIASFMKRKFDAKYGGHWQCVVGRNFGSHL--DPIQFIHFTVSKISVILFR 129


>AL161711-2|CAD31700.1|  111|Caenorhabditis elegans Hypothetical
           protein Y10G11A.2a protein.
          Length = 111

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 25/60 (41%), Positives = 43/60 (71%)
 Frame = -2

Query: 700 ALEKFNIEKDIAAFIKKEFDKKYNPTWHCIVGRNXGSYVTHETRHFIYFYLGQVAILLFK 521
           AL+   IE +IA+F+K++FD KY   W C+VGRN GS++  +   FI+F + +++++LF+
Sbjct: 54  ALQLCGIENEIASFMKRKFDAKYGGHWQCVVGRNFGSHL--DPIQFIHFTVSKISVILFR 111


>AL032639-6|CAA21630.1|  405|Caenorhabditis elegans Hypothetical
           protein Y38F1A.5 protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +3

Query: 600 LRPTMQCQVGLYFLSN 647
           L P+MQC +GLY++SN
Sbjct: 242 LFPSMQCAIGLYYVSN 257


>AF053067-1|AAC35273.1|  405|Caenorhabditis elegans cyclin D
           protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +3

Query: 600 LRPTMQCQVGLYFLSN 647
           L P+MQC +GLY++SN
Sbjct: 242 LFPSMQCAIGLYYVSN 257


>AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp
           associated factor homologprotein 1 protein.
          Length = 767

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +2

Query: 452 YPSDNTASAANKKIEVMLNGLTALKEQYSHLSQVEVDEVASLVCHIRAXI 601
           Y  D    + + KI  +L  LTA K  +   S V+V EV     HI+  I
Sbjct: 642 YHLDERDDSLDSKIGAILKKLTADKNAWPFASPVDVKEVPEYYDHIKHPI 691


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,107,749
Number of Sequences: 27780
Number of extensions: 293808
Number of successful extensions: 601
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)