Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_O06
(765 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 170 2e-43
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 27 3.9
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 26 5.1
SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subu... 26 5.1
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 26 5.1
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 25 9.0
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 25 9.0
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 25 9.0
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 25 9.0
>SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransferase
Skb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 645
Score = 170 bits (413), Expect = 2e-43
Identities = 104/257 (40%), Positives = 146/257 (56%), Gaps = 20/257 (7%)
Frame = -3
Query: 757 VVVIXGDMRQINLSPKADIIVXELLGSWGDNELSPECLDGASNLL-KPGGISIPSSYRSY 581
V ++ GDMR N K DI+V ELLGS GDNELSPECLDG ++L + GI IPSSY SY
Sbjct: 400 VTLVFGDMRTWNPDYKIDILVSELLGSMGDNELSPECLDGVQHVLDEETGICIPSSYISY 459
Query: 580 VAPITSPRLWAAAKIATSGIPQQKDKN-LETLWVVYMQN-----KHDIAETKLVFTFNHP 419
V PI SP+LW+ A+ D N E +VV M + D + +++F+HP
Sbjct: 460 VTPIMSPKLWSEAR-------NMNDPNAFERQYVVLMNSFDFLAADDEFRFQSLWSFHHP 512
Query: 418 SKAVKDEEGCDKSDYRGLPLTNNRRQATLTWDVQQDNIMHGFGGYFDCTLYGNEMISIVP 239
+ KD E K+ +N+R A++ + I+HGF GYF+ TLY + +SI+P
Sbjct: 513 N---KDSEVYTKN-------LHNKRFASVRFQASSPGILHGFAGYFEATLYKDISLSIMP 562
Query: 238 GT---HSPGMISWFPVFIPIKTPMRVQKGDKITATFWRCVDSRRVWYEW------VVEVG 86
T SP M SWFP+++PIK PM V + ++ WR D RVW+EW V+ G
Sbjct: 563 ATMEAKSPDMFSWFPIYMPIKKPMYVPENSQLEFHMWRLTDGMRVWFEWCANAYLVLRNG 622
Query: 85 NR----STPLHNANGRS 47
++ ST +HN +G++
Sbjct: 623 SQIKLSSTEVHNISGKA 639
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 262 NEMISIVPGTHSPGMISWFP 203
N +I GT +PG +SWFP
Sbjct: 69 NNIIGKSLGTTNPGQLSWFP 88
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 364 PLTNNRRQATLTWDVQQDNIMHGFGGYFDCTL 269
PLTNN+ QA L W+ +Q + + L
Sbjct: 421 PLTNNKIQANLGWNERQRQCLSSCSSHLSLAL 452
>SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subunit
5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 228
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -3
Query: 205 PVFIPIKTPMRVQKGDKITATFWR--CVDSRRVWY-EWVVEVG 86
PVFI +TP +Q+ + + + R DS RV EW+V +G
Sbjct: 128 PVFIRHRTPEEIQEANSVDISTLRDPQADSDRVQKPEWLVMIG 170
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 54 PLALCSGVDRLPTSTTHSYHTRRESTHLQNVAVILSPFCTR 176
P A S +DRLP+ ++ S+ S + N V +SP R
Sbjct: 102 PHADVSKIDRLPSDSSESHVATPSSPTISNSFVSVSPLLKR 142
>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
Sir2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +3
Query: 84 LPTSTTHSYHTRRESTHLQNVAVILSPFCTRIGVLIGIKTGNQEIIPGLC 233
+P +T Y +R H Q LSP+C + V I + G + LC
Sbjct: 388 IPPTTPQIYISRTPVRHTQFDVNFLSPYCDWVIVEICKRAGWLNELQALC 437
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 86 THFNYPFVPYTTRVNTPPER 145
+HFN F P+T + PP R
Sbjct: 36 SHFNPQFTPFTKSLAPPPSR 55
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = +3
Query: 420 GWLNVKTSFVSAISC---LFCM*TTHNVSRFLS 509
GWL + +SAIS LFC+ + +RFL+
Sbjct: 204 GWLYIIEGLISAISALWILFCLPDDPSTARFLN 236
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 25.4 bits (53), Expect = 9.0
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -3
Query: 673 GDNELSPECLDGASNLLKP-GGISIPSSYRSYVAPITSPRLWAAAKIATSGIPQQKDKNL 497
GD+ L+ +DGASN+ + S+RS AP S A + + +PQ ++ +
Sbjct: 99 GDH-LAIRRVDGASNVTQDYRKAKTKRSFRSVSAPSLSALATQAQRNVSKTLPQSTNETI 157
Query: 496 ETL 488
E L
Sbjct: 158 EKL 160
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,535,255
Number of Sequences: 5004
Number of extensions: 81807
Number of successful extensions: 201
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -