Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_O06
(765 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0312 - 2082614-2082677,2082815-2082945,2083041-2083129,208... 164 6e-41
04_04_1585 + 34616343-34616531,34616677-34616742,34616842-346169... 44 2e-04
07_03_1645 + 28348897-28349100,28349263-28349334,28350113-283502... 39 0.004
06_01_0312 + 2246899-2247105,2247182-2247374,2247607-2247712,224... 39 0.004
10_08_0451 + 18033065-18033253,18033746-18033805,18034256-180343... 34 0.14
11_01_0102 - 749013-749538,749630-749749,749849-750210 31 1.3
10_08_0815 + 20782834-20782996,20783062-20783144,20783227-207832... 30 2.3
12_01_0626 - 5147763-5147879,5148175-5148255,5148336-5148506 29 5.4
02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255 29 5.4
01_06_1332 - 36379736-36379909,36380395-36380459,36380534-363806... 29 5.4
09_04_0515 + 18238434-18238545,18238659-18238709,18238844-182388... 28 9.4
08_02_0180 + 13912769-13913008,13914723-13915006,13915118-139152... 28 9.4
>02_01_0312 -
2082614-2082677,2082815-2082945,2083041-2083129,
2083223-2083292,2083429-2083509,2083768-2083821,
2084864-2085067,2086272-2086366,2086976-2086997,
2087492-2087585,2087677-2087764,2087874-2087979,
2088103-2088189,2088261-2088309,2088418-2088521,
2088605-2088697,2088900-2088974,2089316-2089384,
2090182-2090250,2090339-2090374,2090471-2090565,
2090836-2090911,2091067-2091153,2091287-2091355,
2091654-2091731,2091836-2091925,2092436-2092642,
2092736-2092879
Length = 841
Score = 164 bits (399), Expect = 6e-41
Identities = 91/213 (42%), Positives = 122/213 (57%), Gaps = 4/213 (1%)
Frame = -3
Query: 757 VVVIXGDMRQINLSPKADIIVXELLGSWGDNELSPECLDGASNLLKPGGISIPSSYRSYV 578
V +I DMR KADI+V ELLGS+GDNELSPECLDGA LKP GISIPSSY S++
Sbjct: 377 VTIISSDMRCWEAPEKADILVSELLGSFGDNELSPECLDGAQRFLKPDGISIPSSYTSFI 436
Query: 577 APITSPRLWAAAKIATSGIPQQKD-KNLETLWVVYMQNKHDIAETKLVFTFNHPSKAVKD 401
PIT+ +L + I KD + ET +VV + +A T+ VFTF+HP+ +
Sbjct: 437 EPITASKL-------HNDIKAHKDIAHFETAYVVKLHRIARLAPTQSVFTFDHPNPS--- 486
Query: 400 EEGCDKSDYRGLPLTNNRRQATLTWDVQQDN---IMHGFGGYFDCTLYGNEMISIVPGTH 230
P +N+R L +++ Q+ ++HGF GYFD LY + + I P T
Sbjct: 487 ------------PNASNQRYTKLKFEIPQETGSCLVHGFAGYFDAVLYKDVHLGIEPNTA 534
Query: 229 SPGMISWFPVFIPIKTPMRVQKGDKITATFWRC 131
+P M SWFP+F P++ P+ V I FWRC
Sbjct: 535 TPNMFSWFPIFFPLRKPIYVPSKTPIEVHFWRC 567
>04_04_1585 +
34616343-34616531,34616677-34616742,34616842-34616910,
34617408-34617443,34617877-34617942,34618216-34618284,
34618394-34618471,34618674-34618752,34618866-34618960,
34619056-34619140,34619390-34619571,34619681-34619799,
34620529-34620550
Length = 384
Score = 43.6 bits (98), Expect = 2e-04
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = -3
Query: 757 VVVIXGDMRQINLSPKADIIVXELLGSWGDNE-LSPECLDGASNLLKPGGISIPSSYRSY 581
VVV+ G + + + K D+I+ E +G E + P L LKPGG+ +PS +
Sbjct: 134 VVVVHGRVEDVEVEDKVDVIISEWMGYMLLYESMLPSVLFARDKWLKPGGLILPSHATLF 193
Query: 580 VAPITS 563
+APIT+
Sbjct: 194 MAPITN 199
>07_03_1645 +
28348897-28349100,28349263-28349334,28350113-28350266,
28350973-28351116,28351213-28351316,28351401-28351499,
28351582-28351651,28352127-28352223,28352443-28352497,
28353507-28353590,28353851-28353928,28354027-28354130,
28354212-28354635,28355311-28355346
Length = 574
Score = 39.1 bits (87), Expect = 0.004
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = -3
Query: 757 VVVIXGDMRQINLSPKADIIVXELLGSWGDNELSPEC-LDGASNLLKPGGISIPSSYRSY 581
+ VI G + ++ L KADI++ E +G+ NE E + L PGG P++ R +
Sbjct: 258 ITVIKGKVEEVELPEKADILISEPMGTLLVNERMLESYVIARDRFLVPGGKMFPTTGRIH 317
Query: 580 VAPITSPRLW 551
+AP + L+
Sbjct: 318 MAPFSDEYLY 327
>06_01_0312 +
2246899-2247105,2247182-2247374,2247607-2247712,
2247958-2248147,2248472-2248657,2248739-2248822,
2249207-2249383
Length = 380
Score = 39.1 bits (87), Expect = 0.004
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = -3
Query: 757 VVVIXGDMRQINLSPKADIIVXELLGSWGDNE-LSPECLDGASNLLKPGGISIPSSYRSY 581
V VI G M + L K D+I+ E +G + E + + LKP G+ PS R +
Sbjct: 118 VEVIQGSMEDVVLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPDGVMYPSHARMW 177
Query: 580 VAPITS 563
+API S
Sbjct: 178 LAPIRS 183
>10_08_0451 +
18033065-18033253,18033746-18033805,18034256-18034324,
18034751-18034786,18035081-18035146,18035345-18035443,
18035543-18035620,18035724-18035802,18035999-18036093,
18036251-18036335,18036505-18036698,18036804-18036922,
18037015-18037057
Length = 403
Score = 33.9 bits (74), Expect = 0.14
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -3
Query: 733 RQINLSPKADIIVXELLGSWGDNE-LSPECLDGASNLLKPGGISIPSSYRSYVAPITS 563
+ + + K D+I+ E +G E + + LKPGG+ +PS Y+APIT+
Sbjct: 150 QDVEIEEKVDVIISEWMGYMLLYESMLGSVIFARDKWLKPGGLILPSHASLYLAPITN 207
>11_01_0102 - 749013-749538,749630-749749,749849-750210
Length = 335
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 517 QQKDKNLETLWVVYMQNKHDIAETKLVFTFNHPS 416
QQKDKN ++ V N+H T+L+ N+P+
Sbjct: 181 QQKDKNDPPMFQVTYSNEHTCTTTRLINNINNPA 214
>10_08_0815 +
20782834-20782996,20783062-20783144,20783227-20783268,
20783426-20783467,20783805-20783888,20784065-20784152,
20784276-20784373,20785475-20785519,20785622-20785698,
20785917-20786001,20786346-20786486
Length = 315
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 517 GEFLKLLFSRQPITWETLW-VQHTIDMSLESI 609
GEFLK++ + +T +TLW HT S+E++
Sbjct: 106 GEFLKVIHCTEEMTKQTLWDAMHTEQPSIEAV 137
>12_01_0626 - 5147763-5147879,5148175-5148255,5148336-5148506
Length = 122
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = -3
Query: 733 RQINLSPKADIIVX---ELLGSWGDNELSPECLDGASNLLKPGGISIPSSYRSYVAPITS 563
RQ ++ AD IV E L WG+ + PE G ++ G+S +S++S AP+
Sbjct: 41 RQPEMAIGADKIVIPQQERLRPWGNADEQPEAWIGDPSVCWIVGLSTNNSHQSEKAPLVG 100
Query: 562 PRL 554
R+
Sbjct: 101 QRM 103
>02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255
Length = 965
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/23 (60%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Frame = +3
Query: 51 RPLALCSGV--DRLPTSTTHSYH 113
R L LC V DRLPTST H +H
Sbjct: 80 RALDLCFAVALDRLPTSTEHQHH 102
>01_06_1332 -
36379736-36379909,36380395-36380459,36380534-36380612,
36380794-36380868,36381106-36381609,36382046-36382246,
36383033-36383566
Length = 543
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 615 PGFKRFDA-PSKHSGESSLSPQEPNNSXTIISALGDKFI 728
PGF R D P +H + S+ PQ+P I + G+K +
Sbjct: 473 PGFLREDKNPQRHPVKVSVDPQQPECDAAGIRSTGNKLV 511
>09_04_0515 +
18238434-18238545,18238659-18238709,18238844-18238897,
18239727-18239777,18239845-18239895,18240056-18240210,
18240550-18240663,18240873-18240938,18241478-18241561,
18241640-18241726,18241975-18242066,18242163-18242223,
18242475-18242531,18243129-18243220,18243394-18243584,
18244203-18244321,18244518-18244589,18244699-18244784,
18244866-18244962,18245488-18245622
Length = 608
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -3
Query: 661 LSPECLDGASNLLKPGGISIPSS 593
L E LD AS L+KPGGI + S+
Sbjct: 522 LQDELLDSASMLVKPGGILVYST 544
>08_02_0180 +
13912769-13913008,13914723-13915006,13915118-13915214,
13915358-13915393,13916665-13916810,13917002-13917107,
13917358-13917417,13917787-13917876
Length = 352
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 641 WSIESFKTRRNIDSKLISIVCCTHNVSQVMGC 546
WS E R N L+ + C +NV ++M C
Sbjct: 145 WSSEEINNRANEYWPLVMDIACKNNVKRIMRC 176
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,950,398
Number of Sequences: 37544
Number of extensions: 526631
Number of successful extensions: 1382
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1379
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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