Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_O05
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S...   261   8e-71
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac...   261   8e-71
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    27   1.9  
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    27   2.5  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    27   2.5  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    27   2.5  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    25   7.7  

>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score =  261 bits (639), Expect = 8e-71
 Identities = 120/170 (70%), Positives = 143/170 (84%)
 Frame = -1

Query: 521 DNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRN 342
           + ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R FGIRRN
Sbjct: 3   EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRN 62

Query: 341 EKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGI 162
           EKIA H TVRG KAEEILERGLKV+EYEL++ NFSATGNFGFGIQEHIDLGIKYDPSIGI
Sbjct: 63  EKIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGI 122

Query: 161 YGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQER*WIIL 12
           YG+DFYVV+ RPG  VA R+ + G+VG+ H++  ED + WF+Q+   ++L
Sbjct: 123 YGMDFYVVMDRPGMRVARRKAQRGRVGYTHKINAEDTINWFKQKYDAVVL 172


>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score =  261 bits (639), Expect = 8e-71
 Identities = 120/170 (70%), Positives = 143/170 (84%)
 Frame = -1

Query: 521 DNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRN 342
           + ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R FGIRRN
Sbjct: 3   EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRN 62

Query: 341 EKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGI 162
           EKIA H TVRG KAEEILERGLKV+EYEL++ NFSATGNFGFGIQEHIDLGIKYDPSIGI
Sbjct: 63  EKIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGI 122

Query: 161 YGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKEDAMKWFQQER*WIIL 12
           YG+DFYVV+ RPG  VA R+ + G+VG+ H++  ED + WF+Q+   ++L
Sbjct: 123 YGMDFYVVMDRPGMRVARRKAQRGRVGYTHKINAEDTINWFKQKYDAVVL 172


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +2

Query: 488 YEDSALHF*NYPSEPSSPFYLSST 559
           YE+ + +  +Y S+PSSP Y+SS+
Sbjct: 153 YEEDSYNNYDYTSDPSSPNYISSS 176


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 350 GYQKTALYT*PWKIQAVVL*VAPTPWRHESA 442
           G     +Y   W I A +L V P PWR+ S+
Sbjct: 121 GLYSHPIYPLLWVITAFILIVFPFPWRYRSS 151


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 9/23 (39%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = +1

Query: 10  ISMIHH-LSCWNHFIASSFVRRW 75
           +S IH  ++ W+H+I++SF+ +W
Sbjct: 509 LSTIHSFINNWSHYISASFLSKW 531


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +2

Query: 506 HF*NYPSEPSSPFYLSSTQAVVHAP*LQLFKKTNSFKFPIVSRIKY 643
           HF   P      F    T  V+ A  L    +  +FKFPI S+ KY
Sbjct: 118 HFRMLPQNNFRYFQFYGTTNVISASNLTTTSEIPTFKFPIFSKRKY 163


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = -1

Query: 491 HIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 348
           H++ +  N  +G        A K+ +QLTG+           R  GIR
Sbjct: 604 HLQNISNNYMIGAINAENGEANKLKDQLTGEYKTVPNVAIDYRDHGIR 651


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,875,266
Number of Sequences: 5004
Number of extensions: 59855
Number of successful extensions: 175
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)