Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_O04
(587 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48501-1|CAA88401.1| 522|Homo sapiens polyadenylate binding pro... 49 1e-05
Y00345-1|CAA68428.1| 633|Homo sapiens protein ( Human mRNA for ... 49 1e-05
U75686-1|AAB97309.1| 644|Homo sapiens polyadenylate binding pro... 49 1e-05
U68104-1|AAD08718.1| 636|Homo sapiens poly(A)-binding protein p... 49 1e-05
U33818-1|AAC50350.1| 644|Homo sapiens inducible poly(A)-binding... 49 1e-05
BC094755-1|AAH94755.1| 660|Homo sapiens PABPC4 protein protein. 49 1e-05
BC071591-1|AAH71591.1| 660|Homo sapiens PABPC4 protein protein. 49 1e-05
BC065540-1|AAH65540.1| 631|Homo sapiens PABPC4 protein protein. 49 1e-05
BC041863-1|AAH41863.1| 636|Homo sapiens poly(A) binding protein... 49 1e-05
BC023520-1|AAH23520.1| 636|Homo sapiens poly(A) binding protein... 49 1e-05
BC015958-1|AAH15958.1| 636|Homo sapiens PABPC1 protein protein. 49 1e-05
AL845289-3|CAI12300.1| 644|Homo sapiens poly(A) binding protein... 49 1e-05
AL845289-2|CAI12298.1| 660|Homo sapiens poly(A) binding protein... 49 1e-05
AL845289-1|CAI12299.1| 615|Homo sapiens poly(A) binding protein... 49 1e-05
AL365277-15|CAI16425.1| 410|Homo sapiens poly(A) binding protei... 49 1e-05
AL365277-13|CAI16423.1| 194|Homo sapiens poly(A) binding protei... 49 1e-05
AL365277-4|CAI16414.1| 644|Homo sapiens poly(A) binding protein... 49 1e-05
AL365277-3|CAI16412.1| 660|Homo sapiens poly(A) binding protein... 49 1e-05
AL365277-2|CAI16413.1| 615|Homo sapiens poly(A) binding protein... 49 1e-05
AB208962-1|BAD92199.1| 358|Homo sapiens PABPC4 protein variant ... 49 1e-05
AK222917-1|BAD96637.1| 371|Homo sapiens PABPC4 protein variant ... 48 3e-05
DQ120640-1|ABB92425.1| 630|Homo sapiens PABP3 protein. 47 6e-05
BC045608-1|AAH45608.1| 631|Homo sapiens poly(A) binding protein... 47 6e-05
BC027617-1|AAH27617.1| 631|Homo sapiens poly(A) binding protein... 47 6e-05
AL359757-1|CAH70805.1| 631|Homo sapiens poly(A) binding protein... 47 6e-05
AF132026-1|AAG38953.1| 631|Homo sapiens testis-specific poly(A)... 47 6e-05
AK127880-1|BAC87174.1| 146|Homo sapiens protein ( Homo sapiens ... 46 8e-05
AL109839-10|CAI95639.1| 168|Homo sapiens chromosome 20 open rea... 44 3e-04
AL109839-1|CAI95631.1| 614|Homo sapiens chromosome 20 open read... 44 3e-04
AL008725-4|CAI95662.1| 614|Homo sapiens chromosome 20 open read... 44 3e-04
AL109839-8|CAI95637.1| 149|Homo sapiens chromosome 20 open read... 32 1.7
AL109839-9|CAI95638.1| 171|Homo sapiens chromosome 20 open read... 31 4.0
AL109839-7|CAI95636.1| 151|Homo sapiens chromosome 20 open read... 31 4.0
>Z48501-1|CAA88401.1| 522|Homo sapiens polyadenylate binding
protein II protein.
Length = 522
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/29 (79%), Positives = 27/29 (93%)
Frame = -2
Query: 580 IKIDNSELLHMLEHAESLKAKVDEAVAVL 494
++IDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 472 LEIDNSELLHMLESPESLRSKVDEAVAVL 500
>Y00345-1|CAA68428.1| 633|Homo sapiens protein ( Human mRNA for
polyA binding protein. ).
Length = 633
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/29 (79%), Positives = 27/29 (93%)
Frame = -2
Query: 580 IKIDNSELLHMLEHAESLKAKVDEAVAVL 494
++IDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 583 LEIDNSELLHMLESPESLRSKVDEAVAVL 611
>U75686-1|AAB97309.1| 644|Homo sapiens polyadenylate binding
protein protein.
Length = 644
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/29 (79%), Positives = 27/29 (93%)
Frame = -2
Query: 580 IKIDNSELLHMLEHAESLKAKVDEAVAVL 494
++IDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 595 LEIDNSELLHMLESPESLRSKVDEAVAVL 623
>U68104-1|AAD08718.1| 636|Homo sapiens poly(A)-binding protein
protein.
Length = 636
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/29 (79%), Positives = 27/29 (93%)
Frame = -2
Query: 580 IKIDNSELLHMLEHAESLKAKVDEAVAVL 494
++IDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 586 LEIDNSELLHMLESPESLRSKVDEAVAVL 614
>U33818-1|AAC50350.1| 644|Homo sapiens inducible poly(A)-binding
protein protein.
Length = 644
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/29 (79%), Positives = 27/29 (93%)
Frame = -2
Query: 580 IKIDNSELLHMLEHAESLKAKVDEAVAVL 494
++IDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 595 LEIDNSELLHMLESPESLRSKVDEAVAVL 623
>BC094755-1|AAH94755.1| 660|Homo sapiens PABPC4 protein protein.
Length = 660
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/29 (79%), Positives = 27/29 (93%)
Frame = -2
Query: 580 IKIDNSELLHMLEHAESLKAKVDEAVAVL 494
++IDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 611 LEIDNSELLHMLESPESLRSKVDEAVAVL 639
>BC071591-1|AAH71591.1| 660|Homo sapiens PABPC4 protein protein.
Length = 660
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/29 (79%), Positives = 27/29 (93%)
Frame = -2
Query: 580 IKIDNSELLHMLEHAESLKAKVDEAVAVL 494
++IDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 611 LEIDNSELLHMLESPESLRSKVDEAVAVL 639
>BC065540-1|AAH65540.1| 631|Homo sapiens PABPC4 protein protein.
Length = 631
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/29 (79%), Positives = 27/29 (93%)
Frame = -2
Query: 580 IKIDNSELLHMLEHAESLKAKVDEAVAVL 494
++IDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 582 LEIDNSELLHMLESPESLRSKVDEAVAVL 610
>BC041863-1|AAH41863.1| 636|Homo sapiens poly(A) binding protein,
cytoplasmic 1 protein.
Length = 636
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/29 (79%), Positives = 27/29 (93%)
Frame = -2
Query: 580 IKIDNSELLHMLEHAESLKAKVDEAVAVL 494
++IDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 586 LEIDNSELLHMLESPESLRSKVDEAVAVL 614
>BC023520-1|AAH23520.1| 636|Homo sapiens poly(A) binding protein,
cytoplasmic 1 protein.
Length = 636
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/29 (79%), Positives = 27/29 (93%)
Frame = -2
Query: 580 IKIDNSELLHMLEHAESLKAKVDEAVAVL 494
++IDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 586 LEIDNSELLHMLESPESLRSKVDEAVAVL 614
>BC015958-1|AAH15958.1| 636|Homo sapiens PABPC1 protein protein.
Length = 636
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/29 (79%), Positives = 27/29 (93%)
Frame = -2
Query: 580 IKIDNSELLHMLEHAESLKAKVDEAVAVL 494
++IDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 586 LEIDNSELLHMLESPESLRSKVDEAVAVL 614
>AL845289-3|CAI12300.1| 644|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibletaining 6 protein.
Length = 644
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/29 (79%), Positives = 27/29 (93%)
Frame = -2
Query: 580 IKIDNSELLHMLEHAESLKAKVDEAVAVL 494
++IDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 595 LEIDNSELLHMLESPESLRSKVDEAVAVL 623
>AL845289-2|CAI12298.1| 660|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibleseudogene protein.
Length = 660
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/29 (79%), Positives = 27/29 (93%)
Frame = -2
Query: 580 IKIDNSELLHMLEHAESLKAKVDEAVAVL 494
++IDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 611 LEIDNSELLHMLESPESLRSKVDEAVAVL 639
>AL845289-1|CAI12299.1| 615|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibleeudogene protein.
Length = 615
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/29 (79%), Positives = 27/29 (93%)
Frame = -2
Query: 580 IKIDNSELLHMLEHAESLKAKVDEAVAVL 494
++IDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 566 LEIDNSELLHMLESPESLRSKVDEAVAVL 594
>AL365277-15|CAI16425.1| 410|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblela) protein.
Length = 410
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/29 (79%), Positives = 27/29 (93%)
Frame = -2
Query: 580 IKIDNSELLHMLEHAESLKAKVDEAVAVL 494
++IDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 361 LEIDNSELLHMLESPESLRSKVDEAVAVL 389
>AL365277-13|CAI16423.1| 194|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblela) protein.
Length = 194
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/29 (79%), Positives = 27/29 (93%)
Frame = -2
Query: 580 IKIDNSELLHMLEHAESLKAKVDEAVAVL 494
++IDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 149 LEIDNSELLHMLESPESLRSKVDEAVAVL 177
>AL365277-4|CAI16414.1| 644|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblepeptide, antigen CD29 includes
protein.
Length = 644
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/29 (79%), Positives = 27/29 (93%)
Frame = -2
Query: 580 IKIDNSELLHMLEHAESLKAKVDEAVAVL 494
++IDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 595 LEIDNSELLHMLESPESLRSKVDEAVAVL 623
>AL365277-3|CAI16412.1| 660|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducible) pseudogene protein.
Length = 660
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/29 (79%), Positives = 27/29 (93%)
Frame = -2
Query: 580 IKIDNSELLHMLEHAESLKAKVDEAVAVL 494
++IDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 611 LEIDNSELLHMLESPESLRSKVDEAVAVL 639
>AL365277-2|CAI16413.1| 615|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblely, member 5 protein.
Length = 615
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/29 (79%), Positives = 27/29 (93%)
Frame = -2
Query: 580 IKIDNSELLHMLEHAESLKAKVDEAVAVL 494
++IDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 566 LEIDNSELLHMLESPESLRSKVDEAVAVL 594
>AB208962-1|BAD92199.1| 358|Homo sapiens PABPC4 protein variant
protein.
Length = 358
Score = 49.2 bits (112), Expect = 1e-05
Identities = 23/29 (79%), Positives = 27/29 (93%)
Frame = -2
Query: 580 IKIDNSELLHMLEHAESLKAKVDEAVAVL 494
++IDNSELLHMLE ESL++KVDEAVAVL
Sbjct: 309 LEIDNSELLHMLESPESLRSKVDEAVAVL 337
>AK222917-1|BAD96637.1| 371|Homo sapiens PABPC4 protein variant
protein.
Length = 371
Score = 47.6 bits (108), Expect = 3e-05
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = -2
Query: 580 IKIDNSELLHMLEHAESLKAKVDEAVAVL 494
++IDNSELLHMLE ESL++KVDEA AVL
Sbjct: 322 LEIDNSELLHMLESPESLRSKVDEAAAVL 350
>DQ120640-1|ABB92425.1| 630|Homo sapiens PABP3 protein.
Length = 630
Score = 46.8 bits (106), Expect = 6e-05
Identities = 22/29 (75%), Positives = 27/29 (93%)
Frame = -2
Query: 580 IKIDNSELLHMLEHAESLKAKVDEAVAVL 494
++IDNSELL+MLE ESL++KVDEAVAVL
Sbjct: 581 LEIDNSELLYMLESPESLRSKVDEAVAVL 609
>BC045608-1|AAH45608.1| 631|Homo sapiens poly(A) binding protein,
cytoplasmic 3 protein.
Length = 631
Score = 46.8 bits (106), Expect = 6e-05
Identities = 22/29 (75%), Positives = 27/29 (93%)
Frame = -2
Query: 580 IKIDNSELLHMLEHAESLKAKVDEAVAVL 494
++IDNSELL+MLE ESL++KVDEAVAVL
Sbjct: 581 LEIDNSELLYMLESPESLRSKVDEAVAVL 609
>BC027617-1|AAH27617.1| 631|Homo sapiens poly(A) binding protein,
cytoplasmic 3 protein.
Length = 631
Score = 46.8 bits (106), Expect = 6e-05
Identities = 22/29 (75%), Positives = 27/29 (93%)
Frame = -2
Query: 580 IKIDNSELLHMLEHAESLKAKVDEAVAVL 494
++IDNSELL+MLE ESL++KVDEAVAVL
Sbjct: 581 LEIDNSELLYMLESPESLRSKVDEAVAVL 609
>AL359757-1|CAH70805.1| 631|Homo sapiens poly(A) binding protein,
cytoplasmic 3 protein.
Length = 631
Score = 46.8 bits (106), Expect = 6e-05
Identities = 22/29 (75%), Positives = 27/29 (93%)
Frame = -2
Query: 580 IKIDNSELLHMLEHAESLKAKVDEAVAVL 494
++IDNSELL+MLE ESL++KVDEAVAVL
Sbjct: 581 LEIDNSELLYMLESPESLRSKVDEAVAVL 609
>AF132026-1|AAG38953.1| 631|Homo sapiens testis-specific
poly(A)-binding protein protein.
Length = 631
Score = 46.8 bits (106), Expect = 6e-05
Identities = 22/29 (75%), Positives = 27/29 (93%)
Frame = -2
Query: 580 IKIDNSELLHMLEHAESLKAKVDEAVAVL 494
++IDNSELL+MLE ESL++KVDEAVAVL
Sbjct: 581 LEIDNSELLYMLESPESLRSKVDEAVAVL 609
>AK127880-1|BAC87174.1| 146|Homo sapiens protein ( Homo sapiens
cDNA FLJ45986 fis, clone PUAEN2000594, highly similar
to Polyadenylate-binding protein 1. ).
Length = 146
Score = 46.4 bits (105), Expect = 8e-05
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = -2
Query: 580 IKIDNSELLHMLEHAESLKAKVDEAVAVL 494
++IDNSELLHML+ ESL +KVDEAVAVL
Sbjct: 96 LEIDNSELLHMLKSPESLHSKVDEAVAVL 124
>AL109839-10|CAI95639.1| 168|Homo sapiens chromosome 20 open
reading frame 119 protein.
Length = 168
Score = 44.4 bits (100), Expect = 3e-04
Identities = 22/29 (75%), Positives = 25/29 (86%)
Frame = -2
Query: 580 IKIDNSELLHMLEHAESLKAKVDEAVAVL 494
++IDNSELL MLE ESL AK+DEAVAVL
Sbjct: 126 LEIDNSELLLMLESPESLHAKIDEAVAVL 154
>AL109839-1|CAI95631.1| 614|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 614
Score = 44.4 bits (100), Expect = 3e-04
Identities = 22/29 (75%), Positives = 25/29 (86%)
Frame = -2
Query: 580 IKIDNSELLHMLEHAESLKAKVDEAVAVL 494
++IDNSELL MLE ESL AK+DEAVAVL
Sbjct: 572 LEIDNSELLLMLESPESLHAKIDEAVAVL 600
>AL008725-4|CAI95662.1| 614|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 614
Score = 44.4 bits (100), Expect = 3e-04
Identities = 22/29 (75%), Positives = 25/29 (86%)
Frame = -2
Query: 580 IKIDNSELLHMLEHAESLKAKVDEAVAVL 494
++IDNSELL MLE ESL AK+DEAVAVL
Sbjct: 572 LEIDNSELLLMLESPESLHAKIDEAVAVL 600
>AL109839-8|CAI95637.1| 149|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 149
Score = 31.9 bits (69), Expect = 1.7
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = -2
Query: 580 IKIDNSELLHMLEHAESLKAKV 515
++IDNSELL MLE ESL AK+
Sbjct: 126 LEIDNSELLLMLESPESLHAKI 147
>AL109839-9|CAI95638.1| 171|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 171
Score = 30.7 bits (66), Expect = 4.0
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = -2
Query: 580 IKIDNSELLHMLEHAESLKAK 518
++IDNSELL MLE ESL AK
Sbjct: 126 LEIDNSELLLMLESPESLHAK 146
>AL109839-7|CAI95636.1| 151|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 151
Score = 30.7 bits (66), Expect = 4.0
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = -2
Query: 580 IKIDNSELLHMLEHAESLKAK 518
++IDNSELL MLE ESL AK
Sbjct: 107 LEIDNSELLLMLESPESLHAK 127
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,604,426
Number of Sequences: 237096
Number of extensions: 802919
Number of successful extensions: 1175
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6155099854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -