Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_O04
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U24123-1|AAA65224.1|  646|Caenorhabditis elegans polyadenylate-b...    37   0.009
AL032631-4|CAE54917.1|  586|Caenorhabditis elegans Hypothetical ...    37   0.009
AL032631-3|CAE54916.1|  583|Caenorhabditis elegans Hypothetical ...    37   0.009
AL032631-2|CAA21572.1|  646|Caenorhabditis elegans Hypothetical ...    37   0.009
Z68004-5|CAA91986.1|  114|Caenorhabditis elegans Hypothetical pr...    27   7.5  

>U24123-1|AAA65224.1|  646|Caenorhabditis elegans
           polyadenylate-binding protein protein.
          Length = 646

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 16/29 (55%), Positives = 24/29 (82%)
 Frame = -2

Query: 580 IKIDNSELLHMLEHAESLKAKVDEAVAVL 494
           ++IDNSEL+ ML+ +E  ++KVDEA +VL
Sbjct: 612 LEIDNSELIMMLQDSELFRSKVDEAASVL 640


>AL032631-4|CAE54917.1|  586|Caenorhabditis elegans Hypothetical
           protein Y106G6H.2c protein.
          Length = 586

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 16/29 (55%), Positives = 24/29 (82%)
 Frame = -2

Query: 580 IKIDNSELLHMLEHAESLKAKVDEAVAVL 494
           ++IDNSEL+ ML+ +E  ++KVDEA +VL
Sbjct: 552 LEIDNSELIMMLQDSELFRSKVDEAASVL 580


>AL032631-3|CAE54916.1|  583|Caenorhabditis elegans Hypothetical
           protein Y106G6H.2b protein.
          Length = 583

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 16/29 (55%), Positives = 24/29 (82%)
 Frame = -2

Query: 580 IKIDNSELLHMLEHAESLKAKVDEAVAVL 494
           ++IDNSEL+ ML+ +E  ++KVDEA +VL
Sbjct: 549 LEIDNSELIMMLQDSELFRSKVDEAASVL 577


>AL032631-2|CAA21572.1|  646|Caenorhabditis elegans Hypothetical
           protein Y106G6H.2a protein.
          Length = 646

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 16/29 (55%), Positives = 24/29 (82%)
 Frame = -2

Query: 580 IKIDNSELLHMLEHAESLKAKVDEAVAVL 494
           ++IDNSEL+ ML+ +E  ++KVDEA +VL
Sbjct: 612 LEIDNSELIMMLQDSELFRSKVDEAASVL 640


>Z68004-5|CAA91986.1|  114|Caenorhabditis elegans Hypothetical
           protein F47B10.6 protein.
          Length = 114

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/27 (37%), Positives = 21/27 (77%)
 Frame = +3

Query: 210 KEFINSQRRNVDSYVFLFVNLHSLKLH 290
           +EF+ SQR+ +++Y+ + +N HS+ L+
Sbjct: 79  EEFVVSQRKQLNAYINI-INFHSISLY 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,378,624
Number of Sequences: 27780
Number of extensions: 142947
Number of successful extensions: 354
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)