Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_O03
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    29   0.54 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   2.9  
SPBCPT2R1.03 |||hypothetical protein|Schizosaccharomyces pombe|c...    27   2.9  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    27   2.9  
SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual             25   8.8  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   8.8  

>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = -3

Query: 576 LQAANACRXWPTGRGIYHNENKTFLVWCNEEDHLRIISMQMGGDLQQVYKRLVSAVNEIE 397
           L++      WP    ++  + KT L W  E   L  + + +GG   Q Y  + SA +E  
Sbjct: 186 LRSNTLINTWPNVGHLFAGKWKTTLPWRVESPELHAVQVHLGGSSLQWYV-IPSAHSESF 244

Query: 396 KKI 388
           KK+
Sbjct: 245 KKL 247


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -3

Query: 447  DLQQVYKRLVSAVNEIEKKIPFSHHDR 367
            D+QQ+ + +V+A N  E+K+  +HH R
Sbjct: 2198 DIQQLERSIVNASNMKEEKMLKNHHSR 2224


>SPBCPT2R1.03 |||hypothetical protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 129

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 180 NKRRMGLTEYDAVKEMYDGIAELIKIE 100
           N R +    YDAVK+ YD   ++  I+
Sbjct: 50  NNRNLAFKAYDAVKQKYDSSIKVFNIQ 76


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 125 PSYISLTASYSVSPMRRLLEMSYTPPSASV 214
           P+Y +LT +  VSP R     S   PSASV
Sbjct: 420 PNYANLTPTPQVSPKRPTYSRSSPLPSASV 449


>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 484

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 7/12 (58%), Positives = 12/12 (100%)
 Frame = +2

Query: 416 LTSLLYTCCRSP 451
           LTS++Y+CC++P
Sbjct: 392 LTSVIYSCCKTP 403


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +2

Query: 125  PSYISLTASYSVSPMRRLLEMSYTPPSASVCSPRVP 232
            PSY   +  YS SP       SY+P S S  SP  P
Sbjct: 1556 PSYSPSSPGYSTSPAYMPSSPSYSPTSPSY-SPTSP 1590


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.138    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,596,232
Number of Sequences: 5004
Number of extensions: 26528
Number of successful extensions: 71
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)