Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_O03
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0201 - 14768341-14768524,14768720-14768838                       29   3.9  
11_04_0221 + 15021145-15022497                                         28   6.8  
08_01_0397 - 3509186-3510291,3510322-3512335                           27   9.0  
01_05_0791 + 25267885-25267930,25268258-25268713,25268802-252688...    27   9.0  

>11_04_0201 - 14768341-14768524,14768720-14768838
          Length = 100

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 472 HHLDADGRRPAAGVQEAGERRQRDREED 389
           +H + +GRR AA ++ A  +R   REED
Sbjct: 57  NHQNTEGRRSAAAMRTATRQRDAKREED 84


>11_04_0221 + 15021145-15022497
          Length = 450

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 91  VGAAASRLCIYLSFRGGRALVSGPPLLHDD 2
           VG A  R+C YL  RG   + +G    HD+
Sbjct: 15  VGEAVGRICSYLISRGEEEVAAGDGAEHDE 44


>08_01_0397 - 3509186-3510291,3510322-3512335
          Length = 1039

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 8/36 (22%)
 Frame = -2

Query: 472 HHLDADGRRPAAG--------VQEAGERRQRDREED 389
           HH DA+   PA+G        V+EA  RRQ+ +EE+
Sbjct: 130 HHRDAEPEGPASGAREEEVVDVEEAERRRQKKKEEE 165


>01_05_0791 +
           25267885-25267930,25268258-25268713,25268802-25268832,
           25268949-25269255
          Length = 279

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +2

Query: 71  SARGGAYRDFSILMSSAMPSYISLTASYSVSPMRRLLEMSYTP 199
           SARG + R     +S A PSY ++T   S S     + MS +P
Sbjct: 29  SARGASARRGLATVSVAKPSYPTVTTPMSASTSPSTMPMSSSP 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.138    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,665,559
Number of Sequences: 37544
Number of extensions: 236614
Number of successful extensions: 772
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)